Gene: ATR0661G260
General Information
Structural Information
- Species Amborella trichopoda
- Gene Identifier ATR0661G260
- Transcript Identifier ATR0661G260.1
- Gene Type Coding gene
- Location AmTr_v1.0_scaffold00001 : 3151330-3153763 : positive
Gene Family Information
- ID HOM05D004376
- #Genes/#Species 163/98
- Phylogenetic origin
- ID ORTHO05D005304
- #Genes/#Species 160/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id evm_27.TU.AmTr_v1.0_scaffold00001.178.v1.0
- pacid 31551352
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0001522 | IEA | InterPro | pseudouridine synthesis | |
| GO:0009451 | IEA | InterPro | RNA modification | |
| GO:0031119 | ISO | PLAZA Homology (enrichment) | tRNA pseudouridine synthesis | HOM05D004376 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0009982 | IEA | InterPro | pseudouridine synthase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G20370 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR020103 | Pseudouridine synthase, catalytic domain superfamily |
| IPR001406 | Pseudouridine synthase I, TruA |
| IPR020097 | Pseudouridine synthase I, TruA, alpha/beta domain |
| IPR020095 | Pseudouridine synthase I, TruA, C-terminal |
| IPR020094 | Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal |
| Mapman id | Description |
|---|---|
| 16.5.3.1 | RNA processing.RNA modification.pseudouridylation.tRNA pseudouridine synthase (TruA) |