Gene: PGR083G1997
General Information
Structural Information
- Species Punica granatum
- Gene Identifier PGR083G1997
- Transcript Identifier PGR083G1997.01
- Gene Type Coding gene
- Location NC_045133.1 : 24808904-24810357 : negative
Gene Family Information
- ID HOM05D004376
- #Genes/#Species 163/98
- Phylogenetic origin
- ID ORTHO05D005304
- #Genes/#Species 160/98
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- pid XP_031405794.1
- name LOC116214541
- name XM_031549934.1
- id gene-LOC116214541
- uniprot A0A6P8EH55
Descriptions
- product tRNA pseudouridine synthase A-like
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0001522 | IEA | GOA Database | pseudouridine synthesis | |
| GO:0001522 | IEA | InterPro | pseudouridine synthesis | |
| GO:0009451 | IEA | GOA Database | RNA modification | |
| GO:0009451 | IEA | InterPro | RNA modification | |
| GO:0008033 | IEA | GOA Database | tRNA processing | |
| GO:0031119 | ISO | PLAZA Homology (enrichment) | tRNA pseudouridine synthesis | HOM05D004376 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0009982 | IEA | GOA Database | pseudouridine synthase activity | |
| GO:0009982 | IEA | InterPro | pseudouridine synthase activity | |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0106029 | IEA | GOA Database | tRNA pseudouridine synthase activity | |
| GO:0016853 | IEA | GOA Database | isomerase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G20370 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR020103 | Pseudouridine synthase, catalytic domain superfamily |
| IPR020095 | Pseudouridine synthase I, TruA, C-terminal |
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR001406 | Pseudouridine synthase I, TruA |
| IPR020097 | Pseudouridine synthase I, TruA, alpha/beta domain |
| IPR002885 | Pentatricopeptide repeat |
| Mapman id | Description |
|---|---|
| 16.5.3.1 | RNA processing.RNA modification.pseudouridylation.tRNA pseudouridine synthase (TruA) |