Gene: Lj4g0015297
General Information
Structural Information
- Species Lotus japonicus
- Gene Identifier Lj4g0015297
- Transcript Identifier Lj4g0015297.2
- Gene Type Coding gene
- Location chr4 : 17474753-17476445 : negative
Gene Family Information
- ID HOM05D004376
- #Genes/#Species 163/98
- Phylogenetic origin
- ID ORTHO05D005304
- #Genes/#Species 160/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id Lj4g0015297.Lj1.0v1
- pacid 44937529
Descriptions
- Description 4.2.1.70//5.4.99.12 - Pseudouridylate synthase / Uracil hydrolyase // tRNA pseudouridine(38-40) synthase / tRNA pseudouridylate synthase I
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0031119 | IEA | InterPro | tRNA pseudouridine synthesis | |
| GO:0001522 | IEA | InterPro | pseudouridine synthesis | |
| GO:0009451 | IEA | InterPro | RNA modification |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009982 | IEA | InterPro | pseudouridine synthase activity | |
| GO:0003723 | IEA | InterPro | RNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G20370 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR041708 | Pseudouridine synthase PUS1/ PUS2-like |
| IPR020097 | Pseudouridine synthase I, TruA, alpha/beta domain |
| IPR020094 | Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal |
| IPR001406 | Pseudouridine synthase I, TruA |
| IPR020095 | Pseudouridine synthase I, TruA, C-terminal |
| IPR020103 | Pseudouridine synthase, catalytic domain superfamily |
| Mapman id | Description |
|---|---|
| 16.5.3.1 | RNA processing.RNA modification.pseudouridylation.tRNA pseudouridine synthase (TruA) |