Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc109.41 Carica papaya HOM05D003820 ORTHO05D004540 1.6e-149 532.7 268 100.0
Ciclev10004667m.g Citrus clementina HOM05D003820 ORTHO05D004540 1.2e-80 303.9 251 64.5
Thecc.06G233400 Theobroma cacao HOM05D003820 ORTHO05D004540 1.6e-80 303.5 252 66.3
CARHR229260 Cardamine hirsuta HOM05D003820 ORTHO05D004540 2.1e-80 303.1 257 64.2
Psat7g171280 Pisum sativum HOM05D003820 ORTHO05D004540 2.7e-80 302.8 246 65.9
AL7G31260 Arabidopsis lyrata HOM05D003820 ORTHO05D004540 3.5e-80 302.4 253 63.6
Ca_00446_v3 Cicer arietinum L. HOM05D003820 ORTHO05D004540 3.0e-79 299.3 246 64.6
VMungo0647G1639 Vigna mungo HOM05D003820 ORTHO05D004540 1.5e-78 297.0 246 63.8
Glyma.13G154200 Glycine max HOM05D003820 ORTHO05D004540 1.9e-78 296.6 246 64.6
Thhalv10024723m.g Eutrema salsugineum HOM05D003820 ORTHO05D004540 4.3e-78 295.4 301 55.5
Phvul.008G270100 Phaseolus vulgaris HOM05D003820 ORTHO05D004540 1.6e-77 293.5 246 63.8
Medtr4g077490 Medicago truncatula HOM05D003820 ORTHO05D004540 2.8e-77 292.7 254 63.8
Rhsim02G0099100 Rhododendron simsii HOM05D003820 ORTHO05D004540 3.7e-77 292.4 255 65.1
Sp7g20480 Schrenkiella parvula HOM05D003820 ORTHO05D004540 1.4e-76 290.4 252 63.1
DCAR_008620 Daucus carota HOM05D003820 ORTHO05D004540 4.0e-76 288.9 252 62.3
Lalb_Chr03g0038011 Lupinus albus HOM05D003820 ORTHO05D004540 6.9e-76 288.1 254 63.4
Actinidia39270 Actinidia chinensis HOM05D003820 ORTHO05D004540 3.4e-75 285.8 257 62.3
Glyma.10G073300 Glycine max HOM05D003820 ORTHO05D004540 4.5e-75 285.4 246 62.6
Atru.chr1.2452 Acer truncatum HOM05D003820 ORTHO05D004540 7.6e-75 284.6 252 61.9
AT4G22350 Arabidopsis thaliana HOM05D003820 ORTHO05D004540 7.6e-75 284.6 253 60.1
Phvul.007G152400 Phaseolus vulgaris HOM05D003820 ORTHO05D004540 7.6e-75 284.6 248 62.1
Dinv07403 Davidia involucrata HOM05D003820 ORTHO05D004540 1.7e-74 283.5 253 63.2
PGR042G2289 Punica granatum HOM05D003820 ORTHO05D004540 2.2e-74 283.1 248 61.7
THA.LOC104812993 Tarenaya hassleriana HOM05D003820 ORTHO05D004540 3.8e-74 282.3 208 71.2
PGR102G0671 Punica granatum HOM05D003820 ORTHO05D004540 6.4e-74 281.6 248 63.7
CANSAT56G3158 Cannabis sativa HOM05D003820 ORTHO05D004540 3.2e-73 279.3 254 62.2
CsaV3_1G017170 Cucumis sativus L. HOM05D003820 ORTHO05D004540 4.2e-73 278.9 259 59.8
Duzib235G0001 Durio zibethinus HOM05D003820 ORTHO05D004540 4.2e-73 278.9 247 62.8
Eucgr.H03283 Eucalyptus grandis HOM05D003820 ORTHO05D004540 5.5e-73 278.5 247 62.8
MELO3C025562.2 Cucumis melo HOM05D003820 ORTHO05D004540 9.3e-73 277.7 255 60.0
PSO675G6471 Papaver somniferum HOM05D003820 ORTHO05D004540 1.2e-72 277.3 244 62.3
Atru.chr1.2449 Acer truncatum HOM05D003820 ORTHO05D004540 2.1e-72 276.6 227 64.8
Sed0023864 Sechium edule HOM05D003820 ORTHO05D004540 2.1e-72 276.6 254 60.2
Ah.14g087640 Amaranthus hybridus HOM05D003820 ORTHO05D004540 3.5e-72 275.8 253 60.5
QL05p069714 Quercus lobata HOM05D003820 ORTHO05D004540 3.5e-72 275.8 259 61.0
Sopen02g017620 Solanum pennellii HOM05D003820 ORTHO05D004540 3.5e-72 275.8 250 59.2
CAN.G1299.7 Capsicum annuum HOM05D003820 ORTHO05D004540 4.6e-72 275.4 255 60.8
CDE07G0952 Ceratophyllum demersum HOM05D003820 ORTHO05D004540 4.6e-72 275.4 252 62.3
TPR.G29505 Trifolium pratense HOM05D003820 ORTHO05D004540 4.6e-72 275.4 245 61.2
Manes.01G126900 Manihot esculenta HOM05D003820 ORTHO05D004540 2.3e-71 273.1 251 61.4
Haze_06920 Corylus avellana HOM05D003820 ORTHO05D004540 3.9e-71 272.3 164 79.3
FvH4_3g00980 Fragaria vesca HOM05D003820 ORTHO05D004540 5.1e-71 271.9 163 79.8
Potri.016G014000 Populus trichocarpa HOM05D003820 ORTHO05D004540 5.1e-71 271.9 257 60.7
Solyc02g068480.3 Solanum lycopersicum HOM05D003820 ORTHO05D004540 5.1e-71 271.9 249 59.0
FAN21G2909 Fragaria x ananassa HOM05D003820 ORTHO05D004540 6.7e-71 271.6 163 79.1
MSTRG.16027 Avicennia marina HOM05D003820 ORTHO05D004540 8.7e-71 271.2 251 61.8
Lsat_1_v5_gn_7_13661 Lactuca sativa HOM05D003820 ORTHO05D004540 1.1e-70 270.8 161 81.4
MD10G1331700 Malus domestica HOM05D003820 ORTHO05D004540 1.1e-70 270.8 244 61.9
Migut.M01395 Erythranthe guttata HOM05D003820 ORTHO05D004540 1.5e-70 270.4 251 61.0
Nitab4.5_0000443g0170 Nicotiana tabacum HOM05D003820 ORTHO05D004540 1.5e-70 270.4 251 59.0
COL.COLO4_19462 Corchorus olitorius HOM05D003820 ORTHO05D004540 1.9e-70 270.0 251 61.8
Lj6g0008289 Lotus japonicus HOM05D003820 ORTHO05D004540 2.5e-70 269.6 255 60.0
Carub.0007s1895 Capsella rubella HOM05D003820 ORTHO05D004540 4.3e-70 268.9 253 59.3
Gorai.010G186600 Gossypium raimondii HOM05D003820 ORTHO05D004540 5.6e-70 268.5 249 61.0
Nn1g07382 Nelumbo nucifera HOM05D003820 ORTHO05D004540 7.4e-70 268.1 212 66.5
Duzib192G0171 Durio zibethinus HOM05D003820 ORTHO05D004540 9.6e-70 267.7 162 79.0
Lj2g0013565 Lotus japonicus HOM05D003820 ORTHO05D004540 9.6e-70 267.7 258 59.7
MD05G1357700 Malus domestica HOM05D003820 ORTHO05D004540 9.6e-70 267.7 250 59.6
ECA233G4304 Erigeron canadensis HOM05D003820 ORTHO05D004540 1.3e-69 267.3 158 81.6
Gohir.A06G205300 Gossypium hirsutum HOM05D003820 ORTHO05D004540 1.3e-69 267.3 154 81.8
Gorai.010G250000 Gossypium raimondii HOM05D003820 ORTHO05D004540 1.3e-69 267.3 154 81.8
Gohir.A06G153180 Gossypium hirsutum HOM05D003820 ORTHO05D004540 1.6e-69 266.9 249 60.6
A01p13710 Brassica napus HOM05D003820 ORTHO05D004540 2.1e-69 266.5 252 59.1
FAN25G1165 Fragaria x ananassa HOM05D003820 ORTHO05D004540 2.1e-69 266.5 208 65.9
vmacro15759 Vaccinium macrocarpon HOM05D003820 ORTHO05D004540 2.1e-69 266.5 197 69.5
C01p16620 Brassica napus HOM05D003820 ORTHO05D004540 3.7e-69 265.8 252 58.3
BolC1t01609H Brassica oleracea HOM05D003820 ORTHO05D004540 3.7e-69 265.8 252 58.3
CSS0023179 Camellia sinensis var. sinensis HOM05D003820 ORTHO05D004540 3.7e-69 265.8 252 59.5
Gohir.D06G216200 Gossypium hirsutum HOM05D003820 ORTHO05D004540 4.8e-69 265.4 154 81.2
Nitab4.5_0008965g0020 Nicotiana tabacum HOM05D003820 ORTHO05D004540 8.2e-69 264.6 259 58.3
TAR626G0254 Trochodendron aralioides HOM05D003820 ORTHO05D004540 8.2e-69 264.6 257 59.5
CiPaw.10G077900 Carya illinoinensis HOM05D003820 ORTHO05D004540 1.1e-68 264.2 246 57.7
Sc17g0007740 Simmondsia chinensis HOM05D003820 ORTHO05D004540 1.1e-68 264.2 252 59.1
CDE04G0225 Ceratophyllum demersum HOM05D003820 ORTHO05D004540 1.4e-68 263.8 246 60.2
ATR0712G044 Amborella trichopoda HOM05D003820 ORTHO05D004540 1.8e-68 263.5 173 72.8
BcaNung01693 Brassica carinata HOM05D003820 ORTHO05D004540 1.8e-68 263.5 206 65.0
Aqoxy3G02484 Aquilegia oxysepala HOM05D003820 ORTHO05D004540 3.1e-68 262.7 254 59.1
C07p51810 Brassica napus HOM05D003820 ORTHO05D004540 3.1e-68 262.7 159 78.0
Lj2A261T37 Lonicera japonica HOM05D003820 ORTHO05D004540 5.3e-68 261.9 151 82.1
Potri.006G010100 Populus trichocarpa HOM05D003820 ORTHO05D004540 5.3e-68 261.9 256 59.4
unitig_62.g23505 Utricularia gibba HOM05D003820 ORTHO05D004540 5.3e-68 261.9 159 79.9
BraA01t01316Z Brassica rapa HOM05D003820 ORTHO05D004540 9.0e-68 261.2 205 65.9
BolC7t45683H Brassica oleracea HOM05D003820 ORTHO05D004540 1.2e-67 260.8 159 77.4
HanXRQChr05g0129131 Helianthus annuus HOM05D003820 ORTHO05D004540 1.2e-67 260.8 157 79.0
Gohir.D06G159900 Gossypium hirsutum HOM05D003820 ORTHO05D004540 2.0e-67 260.0 249 59.4
Prupe.4G010400 Prunus persica HOM05D003820 ORTHO05D004540 2.0e-67 260.0 227 63.0
A03p53480 Brassica napus HOM05D003820 ORTHO05D004540 3.4e-67 259.2 198 66.7
Pp3c2_2850 Physcomitrium patens HOM05D003820 ORTHO05D004540 4.5e-67 258.8 156 77.6
BraA03t14414Z Brassica rapa HOM05D003820 ORTHO05D004540 1.0e-66 257.7 206 64.6
BcaNung02500 Brassica carinata HOM05D003820 ORTHO05D004540 1.7e-66 256.9 206 64.1
Os09g0407900 Oryza sativa ssp. japonica HOM05D003820 ORTHO05D004540 1.7e-66 256.9 156 77.6
Peaxi162Scf00199g00923 Petunia axillaris HOM05D003820 ORTHO05D004540 1.7e-66 256.9 251 57.4
AT4G22285 Arabidopsis thaliana HOM05D003820 ORTHO05D004540 2.2e-66 256.5 154 78.6
Manes.02G083800 Manihot esculenta HOM05D003820 ORTHO05D004540 2.2e-66 256.5 257 57.6
PGSC0003DMG400009435 Solanum tuberosum HOM05D003820 ORTHO05D004540 2.9e-66 256.1 253 56.1
COL.COLO4_14642 Corchorus olitorius HOM05D003820 ORTHO05D004540 3.8e-66 255.8 172 74.4
AUR62021859 Chenopodium quinoa HOM05D003820 ORTHO05D004540 4.9e-66 255.4 161 73.3
HPP92_017772 Vanilla planifolia HOM05D003820 ORTHO05D004540 8.4e-66 254.6 246 59.8
SHI24460 Sapria himalayana HOM05D003820 ORTHO05D004540 1.4e-65 253.8 250 57.2
EL10Ac8g20189 Beta vulgaris HOM05D003820 ORTHO05D004540 2.5e-65 253.1 248 56.9
Sabra16G0001800 Salix brachista HOM05D003820 ORTHO05D004540 3.2e-65 252.7 272 55.9
Sabra16G0016300 Salix brachista HOM05D003820 ORTHO05D004540 3.2e-65 252.7 272 55.9
Hund23407 Selenicereus undatus HOM05D003820 ORTHO05D004540 4.2e-65 252.3 255 58.0
Aa31LG6G4450 Aethionema arabicum HOM05D003820 ORTHO05D004540 7.1e-65 251.5 208 62.5
TPR.G23689 Trifolium pratense HOM05D003820 ORTHO05D004540 7.1e-65 251.5 255 56.1
Medtr4g077320 Medicago truncatula HOM05D003820 ORTHO05D004540 2.7e-64 249.6 159 73.6
Lj2C282T7 Lonicera japonica HOM05D003820 ORTHO05D004540 3.5e-64 249.2 212 64.6
SMO118G0007 Selaginella moellendorffii HOM05D003820 ORTHO05D004540 4.6e-64 248.8 167 72.5
Mapoly0061s0070 Marchantia polymorpha HOM05D003820 ORTHO05D004540 6.0e-64 248.4 196 65.3
Zm00001eb225610 Zea mays HOM05D003820 ORTHO05D004540 2.3e-63 246.5 228 59.2
Sabra06G0008300 Salix brachista HOM05D003820 ORTHO05D004540 3.9e-63 245.7 164 75.6
AagrBONN_evm.TU.Sc2ySwM_344.5496 Anthoceros agrestis HOM05D003820 ORTHO05D004540 5.1e-63 245.4 252 54.4
A06p15880 Brassica napus HOM05D003820 ORTHO05D004540 6.7e-63 245.0 209 63.2
BraA06t24699Z Brassica rapa HOM05D003820 ORTHO05D004540 6.7e-63 245.0 209 63.2
FvH4_6g03150 Fragaria vesca HOM05D003820 ORTHO05D004540 1.3e-61 240.7 189 64.0
FAN14G5460 Fragaria x ananassa HOM05D003820 ORTHO05D004540 1.3e-61 240.7 189 64.0
Lj6P617T46 Lonicera japonica HOM05D003820 ORTHO05D004540 2.8e-61 239.6 175 68.6
CBR_g53671 Chara braunii HOM05D003820 ORTHO05D004540 8.2e-61 238.0 150 74.7
Haze_06925 Corylus avellana HOM05D003820 ORTHO05D004540 2.2e-58 229.9 136 81.6
QL10p037768 Quercus lobata HOM05D003820 ORTHO05D004540 6.5e-58 228.4 135 81.5
Nitab4.5_0001735g0140 Nicotiana tabacum HOM05D003820 ORTHO05D004540 1.4e-57 227.3 145 71.0
PSO541G5704 Papaver somniferum HOM05D003820 ORTHO05D004540 1.9e-57 226.9 136 80.1
RcHm_v2.0_Chr5g0001501 Rosa chinensis HOM05D003820 ORTHO05D004540 4.2e-57 225.7 196 64.3
ClCG01G010210 Citrullus lanatus HOM05D003820 ORTHO05D004540 2.1e-56 223.4 213 59.2
HanXRQChr03g0086431 Helianthus annuus HOM05D003820 ORTHO05D004540 7.9e-56 221.5 146 76.0
HanXRQChr03g0086481 Helianthus annuus HOM05D003820 ORTHO05D004540 3.0e-55 219.5 146 74.7
HanXRQChr03g0086471 Helianthus annuus HOM05D003820 ORTHO05D004540 3.9e-55 219.2 146 74.7
Peaxi162Scf00177g00115 Petunia axillaris HOM05D003820 ORTHO05D004540 6.7e-55 218.4 202 58.9
Hma1.2p1_2009F.1_g310970 Hydrangea macrophylla HOM05D003820 ORTHO05D004540 8.8e-55 218.0 144 72.2
AUR62012795 Chenopodium quinoa HOM05D003820 ORTHO05D004540 2.0e-54 216.9 134 75.4
SEGI_26834 Sequoiadendron giganteum HOM05D003820 ORTHO05D004540 1.1e-52 211.1 103 92.2
Peaxi162Scf00610g00120 Petunia axillaris HOM05D003820 ORTHO05D004540 1.0e-50 204.5 133 69.9
SGA_v2.0_scaffold4G01876 Striga asiatica HOM05D003820 ORTHO05D004540 3.8e-50 202.6 249 52.2
Duzib264G0116 Durio zibethinus HOM05D003820 ORTHO05D004540 2.7e-48 196.4 230 52.2
Hma1.2p1_0657F.1_g197170 Hydrangea macrophylla HOM05D003820 ORTHO05D004540 7.9e-48 194.9 151 65.6
COL.COLO4_04224 Corchorus olitorius HOM05D003820 ORTHO05D004540 1.5e-46 190.7 149 64.4
MCO11G519 Micromonas commoda HOM05D003820 ORTHO05D004540 2.6e-46 189.9 130 66.2
AUR62017961 Chenopodium quinoa HOM05D003820 ORTHO05D004540 1.8e-44 183.7 120 70.8
AUR62014154 Chenopodium quinoa HOM05D003820 ORTHO05D004540 3.5e-43 179.5 119 69.7
FAN09G3292 Fragaria x ananassa HOM05D003820 ORTHO05D004540 5.9e-43 178.7 188 52.7
Cc09_g00870 Coffea canephora HOM05D003820 ORTHO05D004540 1.3e-42 177.6 158 60.1
Haze_26297 Corylus avellana HOM05D003820 ORTHO05D004540 7.2e-41 171.8 122 63.1
CiPaw.09G102300 Carya illinoinensis HOM05D003820 ORTHO05D004540 8.2e-37 158.3 129 65.1
RcHm_v2.0_Chr4g0397451 Rosa chinensis HOM05D003820 ORTHO05D004540 1.8e-36 157.1 147 55.8
Cfa027151 Carpinus fangiana HOM05D003820 ORTHO05D004540 7.0e-36 155.2 162 51.2
Aqoxy5G01269 Aquilegia oxysepala HOM05D003820 ORTHO05D004540 2.6e-35 153.3 93 74.2
HanXRQChr03g0086521 Helianthus annuus HOM05D003820 ORTHO05D004540 2.6e-35 153.3 113 68.1
TPR.G33399 Trifolium pratense HOM05D003820 ORTHO05D004540 4.5e-35 152.5 157 54.1
FAN02G3088 Fragaria x ananassa HOM05D003820 ORTHO05D004540 1.3e-34 151.0 79 86.1
Oeu015944.1 Olea europaea HOM05D003820 ORTHO05D004540 2.0e-30 137.1 251 40.6
arahy.Tifrunner.gnm1.ann1.7FS7F8 Arachis hypogaea HOM05D003820 ORTHO05D004540 2.2e-29 133.7 257 39.7
PRCOL_00000942 Prasinoderma coloniale HOM05D003820 ORTHO05D004540 2.2e-29 133.7 110 55.5
COL.COLO4_11384 Corchorus olitorius HOM05D002880 ORTHO05D003450 1.7e-13 80.9 98 49.0
FAN05G3144 Fragaria x ananassa HOM05D003820 ORTHO05D004540 2.4e-12 77.0 68 54.4
FAN05G4407 Fragaria x ananassa HOM05D003820 ORTHO05D004540 2.4e-12 77.0 68 54.4
ClCG01G010230 Citrullus lanatus HOM05D003820 ORTHO05D004540 8.9e-07 58.5 53 58.5
QL10p037775 Quercus lobata HOM05D003820 ORTHO05D337661 8.9e-07 58.5 117 38.5
SEGI_20748 Sequoiadendron giganteum HOM05D003820 ORTHO05D004540 2.0e-06 57.4 54 57.4
arahy.Tifrunner.gnm1.ann1.U1Q4DS Arachis hypogaea HOM05D003820 ORTHO05D004540 4.4e-06 56.2 56 57.1


User provided reference genes

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