Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 0.0e+00 1645.2 819 100.0
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 0.0e+00 1572.0 818 96.0
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 0.0e+00 1318.9 823 80.2
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 0.0e+00 1313.9 826 79.5
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 0.0e+00 1146.3 791 72.7
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 0.0e+00 1143.6 796 72.2
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 0.0e+00 1142.1 788 72.0
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 0.0e+00 1135.6 799 70.2
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 0.0e+00 1132.9 793 70.6
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 0.0e+00 1124.8 823 69.0
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 0.0e+00 1124.4 823 69.0
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 0.0e+00 1117.8 813 68.0
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 0.0e+00 1117.8 829 68.9
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 0.0e+00 1117.1 808 68.9
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 0.0e+00 1108.2 792 69.6
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 0.0e+00 1103.2 778 70.8
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 0.0e+00 1101.7 829 67.6
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 0.0e+00 1092.4 729 72.2
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 0.0e+00 1090.1 795 68.1
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 0.0e+00 1089.7 791 67.5
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 0.0e+00 1082.8 773 68.7
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 0.0e+00 1081.6 826 66.2
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 0.0e+00 1080.5 799 67.5
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 0.0e+00 1075.5 820 66.7
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 5.6e-312 1073.9 797 66.1
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 1.7e-311 1072.4 802 67.5
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 2.2e-311 1072.0 733 69.8
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 1.5e-310 1069.3 819 65.9
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 2.1e-309 1065.4 744 68.7
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 8.0e-309 1063.5 820 65.6
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 3.4e-307 1058.1 784 67.0
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 3.4e-307 1058.1 744 68.3
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 8.3e-306 1053.5 813 64.5
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 1.8e-305 1052.4 658 75.1
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 3.1e-305 1051.6 782 66.2
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 3.5e-304 1048.1 797 63.7
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 1.9e-302 1042.3 720 68.6
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 1.4e-300 1036.2 778 63.8
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 1.5e-299 1032.7 753 67.1
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.2e-298 1028.9 766 68.5
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 2.8e-298 1028.5 709 70.1
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 3.7e-298 1028.1 735 69.9
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 6.3e-298 1027.3 826 63.7
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 2.4e-297 1025.4 743 67.8
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 4.1e-297 1024.6 778 63.8
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 7.0e-297 1023.8 701 67.8
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 3.6e-293 1011.5 706 66.4
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 1.0e-292 1010.0 778 64.5
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 1.5e-291 1006.1 784 62.1
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 2.0e-291 1005.7 794 60.8
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 4.4e-291 1004.6 806 64.1
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 4.4e-291 1004.6 806 62.7
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 2.4e-289 998.8 688 66.4
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 5.6e-286 987.6 783 64.2
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 2.4e-281 972.2 808 60.3
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 7.0e-281 970.7 782 61.4
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 4.6e-280 968.0 802 60.2
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 6.0e-280 967.6 819 59.7
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 7.3e-278 960.7 736 62.5
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 2.8e-277 958.7 824 58.9
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 6.2e-277 957.6 830 59.2
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 1.1e-276 956.8 770 61.6
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 1.4e-276 956.4 827 59.5
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 1.2e-275 953.4 784 61.0
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 2.6e-275 952.2 780 61.7
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 1.3e-274 949.9 811 59.3
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 1.9e-273 946.0 693 65.4
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 7.1e-273 944.1 793 59.4
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 1.7e-271 939.5 800 59.2
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 1.5e-270 936.4 823 59.4
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 1.2e-269 933.3 804 59.5
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 1.8e-268 929.5 782 59.0
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 3.1e-268 928.7 793 58.5
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 9.9e-267 923.7 801 57.8
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 9.9e-267 923.7 801 57.8
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 9.9e-267 923.7 801 57.8
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 2.9e-266 922.2 795 58.4
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 5.4e-265 917.9 768 60.3
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 1.9e-262 909.4 764 58.5
FAN20G2787 Fragaria x ananassa HOM05D006129 ORTHO05D007446 2.2e-258 896.0 611 70.2
PGSC0003DMG400026525 Solanum tuberosum HOM05D006129 ORTHO05D007446 3.8e-258 895.2 651 65.4
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 2.4e-257 892.5 803 56.8
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 4.2e-257 891.7 805 56.3
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 4.3e-254 881.7 786 57.1
Sopen11g026560 Solanum pennellii HOM05D006129 ORTHO05D007446 2.1e-253 879.4 651 64.8
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 1.4e-249 866.7 795 56.6
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 1.6e-248 863.2 588 71.6
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 3.0e-247 859.0 769 54.6
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 2.5e-246 855.9 689 59.8
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 4.9e-242 841.6 788 54.2
TAR629G1168 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.3e-239 832.8 536 74.3
Medtr0381s0010 Medicago truncatula HOM05D006129 ORTHO05D007446 1.8e-236 823.2 608 63.7
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 1.3e-234 817.0 680 56.0
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 1.4e-233 813.5 669 59.3
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 2.3e-231 806.2 732 53.3
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 3.7e-229 798.9 655 56.9
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 1.2e-227 793.9 834 52.9
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 6.1e-200 701.8 564 64.0
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 6.6e-186 655.2 679 47.9
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 5.2e-183 645.6 786 44.3
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 8.3e-181 638.3 693 47.9
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 4.4e-158 562.8 413 65.6
Cc02_g18440 Coffea canephora HOM05D006129 ORTHO05D007446 7.1e-156 555.4 457 60.0
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 2.4e-140 503.8 536 52.2
TAR371G0992 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.9e-132 477.6 645 44.8
QL11p038542 Quercus lobata HOM05D006129 ORTHO05D007446 2.6e-126 457.2 304 75.7
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 1.5e-113 414.8 489 48.3
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 7.2e-108 396.0 404 56.9
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 8.8e-98 362.5 681 32.2
Atru.chr5.2826 Acer truncatum HOM05D006129 ORTHO05D007446 1.1e-92 345.5 380 52.6
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 2.7e-91 340.9 309 57.6
AagrBONN_evm.TU.Sc2ySwM_344.1734 Anthoceros agrestis HOM05D006129 ORTHO05D007446 4.8e-80 303.5 650 30.2
SMO356G0628 Selaginella moellendorffii HOM05D006129 ORTHO05D007446 4.9e-72 276.9 680 26.3
Mapoly0036s0055 Marchantia polymorpha HOM05D006129 ORTHO05D007446 2.7e-70 271.2 712 26.7
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 1.3e-61 242.3 668 25.9
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 8.9e-58 229.6 248 52.0
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 1.6e-46 192.2 680 24.1
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 3.5e-46 191.0 171 57.9
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 7.8e-46 189.9 169 55.0
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 1.3e-40 172.6 202 52.0
Atru.chr5.2882 Acer truncatum HOM05D006129 ORTHO05D007446 5.6e-36 157.1 198 46.0
Atru.chr5.2820 Acer truncatum HOM05D006129 ORTHO05D007446 1.3e-16 92.8 180 38.9
RcHm_v2.0_Chr6g0302241 Rosa chinensis HOM05D006129 ORTHO05D007446 3.2e-15 88.2 64 57.8
CBR_g8924 Chara braunii HOM05D006129 ORTHO05D007446 3.9e-13 81.3 684 18.6
RcHm_v2.0_Chr1g0376021 Rosa chinensis HOM05D006129 ORTHO05D007446 1.9e-12 79.0 50 66.0
RcHm_v2.0_Chr2g0152801 Rosa chinensis HOM05D006129 ORTHO05D007446 1.3e-11 76.3 52 67.3
CBR_g19584 Chara braunii HOM05D006129 ORTHO05D007446 4.8e-11 74.3 662 18.1
VMungo1309G0481 Vigna mungo HOM05D006842 ORTHO05D008908 4.0e-10 71.2 275 27.6
SGA_v2.0_scaffold340G49333 Striga asiatica HOM05D000300 ORTHO05D000383 1.4e-07 62.8 156 27.6
CiPaw.13G024800 Carya illinoinensis HOM05D000300 ORTHO05D000383 3.2e-07 61.6 183 28.4
TAR371G0388 Trochodendron aralioides HOM05D001464 ORTHO05D002836 3.2e-07 61.6 45 57.8
FAN17G1880 Fragaria x ananassa HOM05D006414 ORTHO05D007780 9.3e-07 60.1 103 32.0
Manes.05G056400 Manihot esculenta HOM05D000300 ORTHO05D000383 1.2e-06 59.7 184 26.1
Sopen10g021030 Solanum pennellii HOM05D007173 ORTHO05D009151 1.2e-06 59.7 372 21.0
Hma1.2p1_0386F.1_g141780 Hydrangea macrophylla HOM05D000001 ORTHO05D000003 1.6e-06 59.3 371 22.6
Lsat_1_v5_gn_6_71420 Lactuca sativa HOM05D001779 ORTHO05D001753 3.5e-06 58.2 155 26.5
Manes.01G273600 Manihot esculenta HOM05D000300 ORTHO05D000383 3.5e-06 58.2 184 25.5
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 4.6e-06 57.8 202 22.3
CAN.G930.13 Capsicum annuum HOM05D007173 ORTHO05D009151 7.9e-06 57.0 372 22.3
PGSC0003DMG401009781 Solanum tuberosum HOM05D007173 ORTHO05D009151 7.9e-06 57.0 283 21.9


User provided reference genes

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