Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 0.0e+00 1170.2 589 100.0
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 0.0e+00 1120.9 646 89.3
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 1.1e-288 996.1 583 84.6
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 9.9e-285 983.0 584 83.2
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 1.6e-266 922.5 586 77.0
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 2.5e-264 915.2 584 78.6
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 3.5e-258 894.8 585 75.2
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 3.0e-257 891.7 586 75.3
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 2.5e-256 888.6 584 74.5
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 1.8e-254 882.5 584 75.7
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 1.8e-254 882.5 582 75.1
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 6.9e-254 880.6 586 73.0
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 2.6e-253 878.6 586 73.7
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 5.8e-253 877.5 584 74.7
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 2.2e-252 875.5 586 74.1
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 6.5e-252 874.0 588 74.7
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.9e-251 872.5 584 73.5
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.9e-251 872.5 584 73.3
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.5e-251 872.1 584 73.5
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 3.2e-251 871.7 585 73.8
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 1.2e-250 869.8 584 73.3
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 2.7e-250 868.6 582 73.4
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.7e-250 868.6 584 72.9
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 4.6e-250 867.8 586 73.4
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 4.6e-250 867.8 581 73.5
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.9e-248 862.4 584 72.4
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 1.9e-248 862.4 584 73.3
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 1.9e-248 862.4 584 73.8
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 1.3e-247 859.8 586 72.9
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 1.6e-247 859.4 586 71.7
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 2.1e-247 859.0 580 73.3
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 4.8e-247 857.8 588 71.1
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 5.3e-246 854.4 585 72.3
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 6.9e-246 854.0 588 71.1
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 5.9e-245 850.9 587 71.4
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 5.9e-245 850.9 582 72.9
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 7.6e-245 850.5 586 71.0
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 1.0e-244 850.1 585 72.6
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 2.9e-244 848.6 588 70.2
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 1.4e-243 846.3 582 71.6
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 3.2e-243 845.1 582 71.6
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 4.2e-243 844.7 566 73.9
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 9.3e-243 843.6 585 71.3
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 1.2e-242 843.2 557 74.9
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 2.7e-242 842.0 584 72.6
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 3.0e-241 838.6 588 69.2
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 5.1e-241 837.8 582 71.5
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 5.1e-241 837.8 588 69.4
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 5.1e-241 837.8 567 73.2
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.5e-240 836.3 582 71.5
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 1.5e-240 836.3 582 71.5
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 1.5e-240 836.3 584 71.1
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 2.5e-240 835.5 581 71.1
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 4.3e-240 834.7 586 71.7
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 5.7e-240 834.3 584 71.4
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 1.6e-239 832.8 584 70.7
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 4.8e-239 831.2 582 71.0
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 4.8e-239 831.2 594 70.4
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 1.8e-238 829.3 585 70.1
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 6.9e-238 827.4 584 70.4
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 1.0e-236 823.5 586 69.6
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 1.7e-236 822.8 584 71.6
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 2.9e-236 822.0 587 68.1
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 1.1e-235 820.1 584 68.7
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 5.5e-235 817.8 585 71.1
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 4.6e-234 814.7 587 67.5
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 3.9e-233 811.6 584 69.0
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 8.8e-233 810.4 606 68.0
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 3.1e-230 802.0 605 66.1
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 4.1e-230 801.6 584 68.7
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 2.6e-229 798.9 598 67.7
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 7.7e-229 797.3 585 68.2
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 1.1e-227 793.5 585 68.2
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 2.1e-226 789.3 585 67.5
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 2.1e-226 789.3 580 68.3
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 3.3e-224 781.9 588 67.0
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.8e-222 776.2 586 67.7
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 2.0e-221 772.7 616 64.6
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 2.6e-221 772.3 584 67.3
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 1.1e-219 766.9 610 63.8
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 2.1e-218 762.7 581 64.5
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 4.5e-205 718.4 584 60.4
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 7.7e-205 717.6 581 62.8
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 1.0e-204 717.2 585 60.7
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 2.9e-204 715.7 584 60.6
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 2.9e-204 715.7 490 72.2
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 5.0e-204 714.9 584 60.6
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 8.6e-204 714.1 585 59.8
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 1.5e-203 713.4 585 60.9
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 9.5e-203 710.7 586 60.4
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 1.0e-201 707.2 572 60.3
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 1.4e-201 706.8 582 60.5
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 4.4e-200 701.8 605 60.7
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 7.5e-200 701.0 572 61.7
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 2.8e-199 699.1 561 62.6
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 4.9e-199 698.4 459 76.0
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 1.4e-198 696.8 566 61.0
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 5.9e-197 691.4 580 59.5
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 5.0e-196 688.3 584 58.4
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 5.4e-182 641.7 586 55.8
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 7.0e-182 641.3 585 56.4
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 1.7e-175 620.2 449 69.0
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 1.3e-172 610.5 614 55.0
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 8.6e-172 607.8 576 57.5
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 8.6e-172 607.8 462 65.6
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 1.5e-171 607.1 557 58.9
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 2.2e-167 593.2 605 51.9
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 1.1e-161 574.3 413 68.0
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 3.8e-159 565.8 589 54.2
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 2.1e-149 533.5 594 46.6
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 5.6e-147 525.4 589 46.7
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 2.0e-144 516.9 564 50.4
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 2.4e-137 493.4 357 67.2
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 2.8e-130 469.9 528 45.8
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 2.2e-122 443.7 297 75.1
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 8.2e-122 441.8 584 41.1
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 4.1e-121 439.5 409 56.0
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 3.6e-117 426.4 276 75.7
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 1.4e-97 361.3 425 44.2
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 3.3e-86 323.6 204 74.5
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 3.7e-82 310.1 331 54.1
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 3.6e-77 293.5 190 74.2
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 1.4e-68 265.0 374 42.5
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 3.3e-54 217.2 164 65.9
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 1.4e-52 211.8 144 68.1
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 2.6e-51 207.6 175 63.4
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 4.9e-50 203.4 222 48.6
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 3.1e-44 184.1 202 51.5
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 4.4e-43 180.3 253 41.9
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 7.6e-43 179.5 196 54.6
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 1.1e-38 165.6 116 69.0
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 5.6e-38 163.3 105 74.3
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 6.9e-36 156.4 92 79.3
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 7.1e-33 146.4 96 71.9
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 2.1e-32 144.8 201 41.3
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 3.9e-31 140.6 384 29.4
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 4.0e-28 130.6 82 74.4
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.1e-25 122.5 101 60.4
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 1.2e-24 119.0 76 68.4
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 7.4e-22 109.8 72 73.6
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 7.4e-22 109.8 105 50.5
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 4.0e-20 104.0 81 63.0
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 2.6e-19 101.3 126 48.4
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 5.8e-19 100.1 184 35.9
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 1.3e-18 99.0 168 37.5
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 9.3e-17 92.8 187 35.3
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 2.1e-16 91.7 133 42.9
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 2.7e-16 91.3 66 66.7
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 3.0e-15 87.8 264 29.9
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 2.5e-14 84.7 66 63.6
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 3.3e-14 84.3 80 55.0
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 3.7e-13 80.9 521 22.5
Oeu032522.1 Olea europaea HOM05D004484 ORTHO05D005370 1.2e-08 65.9 59 55.9


User provided reference genes

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