Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 0.0e+00 1359.4 691 100.0
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 0.0e+00 1099.0 687 78.9
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 0.0e+00 1088.6 688 78.2
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 0.0e+00 1077.4 688 77.6
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 5.2e-309 1063.9 687 76.1
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 2.6e-308 1061.6 687 76.0
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 1.3e-307 1059.3 683 75.8
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 8.2e-307 1056.6 697 75.8
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 9.1e-306 1053.1 684 76.6
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 5.5e-303 1043.9 687 74.8
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 6.1e-302 1040.4 687 74.2
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 2.2e-299 1031.9 693 75.2
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 3.1e-298 1028.1 695 74.8
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 1.5e-295 1019.2 687 73.4
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 4.2e-295 1017.7 687 74.8
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 3.6e-294 1014.6 670 74.8
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 4.7e-294 1014.2 687 74.4
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 3.4e-292 1008.1 690 71.7
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 7.5e-292 1006.9 688 71.8
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 2.8e-291 1005.0 687 73.8
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 8.3e-291 1003.4 687 73.2
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 2.0e-289 998.8 685 72.7
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 1.7e-288 995.7 693 73.3
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 3.8e-288 994.6 689 71.4
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 3.8e-288 994.6 687 72.2
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 8.6e-288 993.4 690 72.5
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 1.2e-286 989.6 687 72.2
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 4.0e-285 984.6 670 73.3
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 6.8e-285 983.8 672 72.5
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 3.4e-284 981.5 687 70.7
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 7.5e-284 980.3 683 71.7
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 1.7e-283 979.2 742 67.0
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 1.7e-283 979.2 690 70.9
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 4.9e-283 977.6 687 71.9
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 8.3e-283 976.9 688 70.1
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 3.2e-282 974.9 687 71.0
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 4.1e-282 974.5 688 70.1
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 5.4e-282 974.2 687 71.2
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 1.6e-281 972.6 687 70.0
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 3.5e-281 971.5 686 70.4
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 1.0e-280 969.9 687 70.5
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 1.5e-279 966.1 687 71.5
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 3.3e-279 964.9 687 71.2
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 7.3e-279 963.8 687 69.0
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 2.1e-278 962.2 688 70.5
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 3.6e-278 961.4 717 68.5
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 6.2e-278 960.7 687 70.5
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.3e-277 958.7 687 70.5
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 3.1e-277 958.4 688 69.9
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 6.8e-277 957.2 687 71.0
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.5e-276 956.1 687 70.9
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 2.6e-276 955.3 688 69.2
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.3e-275 953.0 687 70.6
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.7e-275 952.6 687 70.7
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 1.9e-274 949.1 687 69.6
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 9.2e-274 946.8 687 69.9
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 9.2e-274 946.8 687 69.9
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 1.6e-273 946.0 687 68.9
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.7e-273 945.3 687 69.6
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 4.6e-273 944.5 706 66.7
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 3.9e-272 941.4 688 68.3
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 2.5e-271 938.7 687 67.8
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 4.3e-271 937.9 687 69.0
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 5.6e-271 937.6 687 69.1
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 1.2e-270 936.4 688 69.8
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 4.7e-270 934.5 688 67.9
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 1.1e-269 933.3 652 71.0
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 8.9e-269 930.2 701 68.6
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 5.4e-266 921.0 717 65.8
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 5.4e-266 921.0 684 67.4
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 2.3e-261 905.6 688 65.8
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 8.9e-261 903.7 688 65.6
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 8.9e-261 903.7 688 65.8
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 7.6e-260 900.6 683 65.6
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 1.3e-259 899.8 687 65.6
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 9.6e-255 883.6 711 62.7
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 8.4e-251 870.5 656 67.4
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 4.2e-250 868.2 689 64.9
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 2.7e-249 865.5 718 62.0
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 1.6e-246 856.3 687 61.9
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 1.4e-245 853.2 689 61.1
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 4.5e-244 848.2 582 72.9
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 1.7e-243 846.3 689 60.2
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 7.9e-241 837.4 681 59.6
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 1.8e-240 836.3 688 60.3
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 1.9e-239 832.8 689 58.8
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 9.6e-239 830.5 685 58.8
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 2.8e-238 828.9 689 58.9
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 3.7e-238 828.6 672 60.4
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 6.2e-238 827.8 685 59.0
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 2.4e-237 825.9 685 58.8
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 6.9e-237 824.3 701 61.8
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 1.6e-233 813.1 669 59.3
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 3.5e-233 812.0 666 62.9
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 4.9e-227 791.6 602 66.4
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 4.1e-221 771.9 675 58.5
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 1.5e-215 753.4 687 56.8
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 1.9e-215 753.1 555 66.1
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 3.0e-208 729.2 705 56.2
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 8.2e-206 721.1 660 58.8
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 2.4e-205 719.5 573 64.4
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 1.5e-204 716.8 714 52.8
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.4e-197 693.7 455 75.8
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 1.6e-196 690.3 492 71.5
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.0e-195 687.6 685 56.5
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 6.7e-192 674.9 686 55.7
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 2.9e-187 659.4 468 69.7
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 1.8e-184 650.2 698 50.1
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 2.0e-180 636.7 654 51.4
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 1.9e-178 630.2 458 66.8
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 3.3e-178 629.4 585 55.4
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 8.9e-176 621.3 671 50.7
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 7.3e-170 601.7 683 47.6
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 2.7e-164 583.2 646 46.6
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 3.6e-161 572.8 516 56.8
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 3.7e-158 562.8 381 72.7
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 1.5e-143 514.2 687 40.3
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 5.6e-114 416.0 457 45.5
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 6.0e-108 396.0 295 67.8
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 1.3e-86 325.1 204 77.0
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.0e-79 301.2 268 61.9
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 2.7e-76 290.8 190 74.7
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 6.1e-60 236.5 211 58.3
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 3.4e-58 230.7 339 42.5
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 1.6e-52 211.8 143 69.2
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 2.1e-52 211.5 164 65.2
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 9.5e-45 186.0 227 44.9
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 1.8e-43 181.8 267 41.9
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 1.9e-40 171.8 192 53.6
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 2.7e-39 167.9 549 27.7
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.0e-38 166.0 202 50.5
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 2.5e-37 161.4 105 75.2
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 9.5e-37 159.5 126 65.9
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 4.7e-36 157.1 116 69.0
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 3.1e-35 154.5 177 50.3
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 4.4e-34 150.6 92 79.3
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 4.9e-33 147.1 201 43.3
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 6.4e-33 146.7 96 74.0
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 1.9e-29 135.2 97 63.9
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 2.5e-29 134.8 95 67.4
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 8.9e-27 126.3 82 72.0
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 8.4e-25 119.8 94 60.6
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 4.2e-24 117.5 76 68.4
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 2.3e-22 111.7 72 77.8
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 2.0e-18 98.6 184 35.9
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 9.9e-18 96.3 168 37.5
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 6.4e-17 93.6 133 45.1
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.1e-16 92.8 62 71.0
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 5.4e-16 90.5 186 36.0
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 2.7e-15 88.2 81 54.3
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 7.8e-15 86.7 81 53.1
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 2.3e-14 85.1 450 25.3
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 5.1e-14 84.0 72 61.1
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 5.1e-14 84.0 62 66.1
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 1.6e-12 79.0 55 63.6
Cfa025796 Carpinus fangiana HOM05D004484 ORTHO05D005370 2.4e-11 75.1 374 24.9
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 4.0e-11 74.3 551 22.1
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 6.9e-11 73.6 50 66.0
Oeu032522.1 Olea europaea HOM05D004484 ORTHO05D005370 2.6e-10 71.6 62 59.7
AagrBONN_evm.TU.Sc2ySwM_368.3370 Anthoceros agrestis HOM05D004484 ORTHO05D005370 1.7e-09 68.9 111 35.1
Hma1.2p1_1470F.1_g285600 Hydrangea macrophylla HOM05D000467 ORTHO05D011800 1.9e-08 65.5 53 69.8


User provided reference genes

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