Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 0.0e+00 1356.7 685 100.0
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 0.0e+00 1316.2 685 96.6
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 0.0e+00 1241.1 685 90.2
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 0.0e+00 1218.8 685 88.6
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 0.0e+00 1125.2 716 80.3
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 0.0e+00 1123.6 684 82.6
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 0.0e+00 1109.7 687 80.9
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 0.0e+00 1091.6 682 80.1
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 0.0e+00 1083.2 689 80.1
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 1.1e-308 1062.8 678 77.4
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 1.2e-302 1042.7 687 76.6
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 1.4e-298 1029.2 687 73.9
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.8e-298 1028.9 687 75.5
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 1.8e-298 1028.9 689 73.9
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 3.1e-298 1028.1 686 75.4
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.0e-297 1025.4 686 75.2
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 2.0e-297 1025.4 686 75.2
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 1.6e-294 1015.8 686 73.6
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 1.0e-293 1013.1 687 72.3
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 7.7e-289 996.9 685 72.8
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 2.7e-286 988.4 744 66.9
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.5e-284 982.6 689 69.7
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 2.0e-284 982.2 684 71.3
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.6e-284 981.9 685 71.1
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 2.6e-281 971.8 686 70.1
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 5.9e-281 970.7 696 70.1
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 7.7e-281 970.3 687 69.9
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 1.0e-280 969.9 686 70.4
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 2.2e-280 968.8 686 70.6
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 8.5e-280 966.8 687 69.0
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 9.4e-279 963.4 671 71.4
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 1.2e-278 963.0 689 69.4
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 2.1e-278 962.2 688 69.2
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 1.0e-277 959.9 688 68.0
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 2.3e-277 958.7 688 68.9
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 4.0e-277 958.0 688 68.6
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 1.2e-276 956.4 688 69.0
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 1.5e-276 956.1 687 69.0
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 7.5e-276 953.7 689 67.8
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 1.3e-275 953.0 687 69.0
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 2.8e-275 951.8 687 68.6
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 2.8e-275 951.8 670 71.3
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 8.2e-275 950.3 688 68.6
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 8.2e-275 950.3 687 68.1
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 1.1e-274 949.9 682 67.9
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.8e-274 949.1 688 68.6
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 4.1e-274 948.0 684 68.3
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 7.0e-274 947.2 688 68.5
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 1.6e-273 946.0 687 68.4
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 2.0e-273 945.7 690 69.9
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 4.5e-273 944.5 688 68.3
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 1.0e-272 943.3 689 67.6
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 1.0e-272 943.3 686 67.6
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 2.9e-272 941.8 692 67.8
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 8.0e-270 933.7 687 68.0
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 1.0e-269 933.3 717 66.1
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 1.4e-269 932.9 685 66.6
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 3.0e-269 931.8 672 67.7
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 5.2e-269 931.0 682 68.0
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 1.5e-268 929.5 697 66.6
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 7.5e-268 927.2 686 66.6
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 2.2e-267 925.6 683 66.3
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 8.3e-267 923.7 688 67.6
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 8.3e-267 923.7 686 65.3
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 1.6e-265 919.5 687 66.4
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 4.5e-265 917.9 698 64.9
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 2.9e-264 915.2 654 67.9
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 9.5e-263 910.2 707 63.2
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 1.5e-260 902.9 687 65.2
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 2.6e-260 902.1 689 65.5
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 2.8e-259 898.7 685 65.3
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 3.7e-259 898.3 687 65.1
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 8.3e-259 897.1 691 66.0
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 2.4e-258 895.6 687 64.6
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 2.3e-256 889.0 718 62.8
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 3.0e-253 878.6 689 65.0
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 4.0e-253 878.2 687 63.3
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 2.3e-248 862.4 712 60.5
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 1.2e-244 850.1 582 71.6
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 1.6e-241 839.7 689 61.7
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 1.8e-237 826.2 685 60.3
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 3.1e-237 825.5 652 63.7
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 1.7e-235 819.7 685 59.9
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 1.4e-234 816.6 657 62.9
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 2.4e-234 815.8 674 59.5
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 1.6e-233 813.1 686 59.6
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 4.6e-233 811.6 681 59.6
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 1.5e-231 806.6 682 58.5
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 9.5e-231 803.9 686 58.7
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 1.6e-230 803.1 682 58.8
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 1.6e-230 803.1 682 58.8
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 1.6e-230 803.1 702 59.5
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 1.3e-227 793.5 677 62.3
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 8.4e-227 790.8 668 59.1
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 5.4e-226 788.1 657 63.9
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 4.3e-223 778.5 664 58.1
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 2.6e-220 769.2 606 64.4
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 6.6e-216 754.6 688 60.5
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 3.4e-212 742.3 540 67.0
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 7.6e-212 741.1 666 58.3
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 1.2e-209 733.8 685 56.5
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 1.3e-206 723.8 675 59.4
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 7.1e-202 708.0 710 52.8
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 6.3e-190 668.3 490 67.8
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 1.8e-189 666.8 566 61.3
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.2e-187 659.8 450 72.0
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 2.6e-180 636.3 466 66.7
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 3.8e-179 632.5 647 51.9
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 2.6e-175 619.8 457 65.0
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 2.6e-175 619.8 671 49.0
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 7.4e-175 618.2 582 56.0
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 1.7e-174 617.1 686 46.1
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 1.7e-174 617.1 675 47.7
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 1.3e-163 580.9 635 46.9
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 5.5e-162 575.5 512 56.6
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 1.8e-160 570.5 381 71.9
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 1.8e-141 507.3 686 40.7
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 4.4e-111 406.4 463 44.7
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 8.7e-107 392.1 296 69.3
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 7.1e-85 319.3 228 68.0
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 7.9e-76 289.3 263 59.3
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 1.0e-75 288.9 190 72.1
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 7.4e-66 256.1 164 80.5
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 9.7e-66 255.8 211 61.6
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 4.5e-63 246.9 329 44.7
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 2.1e-60 238.0 144 77.8
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 4.1e-48 197.2 192 56.8
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 8.5e-46 189.5 217 46.5
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 3.6e-44 184.1 253 44.7
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 6.1e-44 183.3 529 28.7
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 9.8e-42 176.0 93 91.4
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 7.0e-40 169.9 173 56.6
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 9.1e-40 169.5 126 66.7
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.5e-37 162.2 202 45.0
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 5.2e-35 153.7 104 70.2
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 6.8e-35 153.3 115 62.6
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 4.9e-33 147.1 93 73.1
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 3.8e-30 137.5 97 67.0
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 1.8e-27 128.6 94 61.7
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.2e-26 125.9 81 72.8
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 1.5e-26 125.6 201 37.8
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 3.4e-26 124.4 81 79.0
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 8.3e-25 119.8 129 55.8
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 3.2e-24 117.9 95 63.2
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 9.2e-24 116.3 76 72.4
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 5.9e-23 113.6 72 75.0
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 1.8e-19 102.1 55 89.1
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 4.9e-17 94.0 67 68.7
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 8.3e-17 93.2 133 44.4
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 7.8e-15 86.7 184 33.2
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.3e-14 85.9 67 65.7
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 1.3e-14 85.9 264 30.7
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 1.1e-13 82.8 184 32.6
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 9.5e-13 79.7 48 77.1
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 1.2e-12 79.3 188 33.0
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 3.7e-09 67.8 85 40.0
Hma1.2p1_1470F.1_g285600 Hydrangea macrophylla HOM05D000467 ORTHO05D011800 8.3e-09 66.6 53 66.0
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 2.7e-07 61.6 166 27.7
Oeu032522.1 Olea europaea HOM05D004484 ORTHO05D005370 3.5e-07 61.2 47 63.8
AagrBONN_evm.TU.Sc2ySwM_368.3370 Anthoceros agrestis HOM05D004484 ORTHO05D005370 7.8e-07 60.1 111 31.5


User provided reference genes

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