Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 0.0e+00 1361.3 685 100.0
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 0.0e+00 1317.0 685 96.6
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 0.0e+00 1263.8 685 91.5
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 0.0e+00 1239.9 685 90.2
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 0.0e+00 1150.6 716 82.0
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 0.0e+00 1147.1 684 84.1
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 0.0e+00 1130.9 687 82.7
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 0.0e+00 1120.1 682 82.4
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 0.0e+00 1110.1 689 82.0
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 0.0e+00 1086.2 678 79.6
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 1.0e-309 1066.2 687 78.3
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.6e-305 1051.6 686 77.3
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 2.6e-305 1051.6 686 77.3
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 4.5e-305 1050.8 687 77.1
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 5.9e-305 1050.4 686 77.0
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 6.5e-304 1047.0 689 74.6
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 1.9e-303 1045.4 687 74.8
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 1.8e-301 1038.9 686 74.8
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 8.7e-301 1036.6 687 73.8
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 1.5e-297 1025.8 685 74.3
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 5.1e-293 1010.7 744 68.3
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.4e-290 1002.7 689 71.0
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 1.2e-289 999.6 684 72.1
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 1.2e-289 999.6 686 72.6
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 2.0e-289 998.8 686 71.7
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.7e-288 995.7 685 72.0
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 6.5e-288 993.8 687 70.9
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 1.1e-287 993.0 686 72.0
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 2.1e-286 988.8 689 70.8
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 2.7e-286 988.4 687 69.9
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 1.8e-285 985.7 696 71.0
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 8.8e-285 983.4 671 72.3
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 2.6e-284 981.9 688 70.1
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 1.7e-283 979.2 688 70.3
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 2.2e-283 978.8 687 70.2
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 2.2e-283 978.8 684 70.2
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 2.8e-283 978.4 687 70.3
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 6.3e-283 977.2 687 70.5
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 6.3e-283 977.2 689 69.4
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 4.1e-282 974.5 688 68.9
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 5.3e-282 974.2 670 72.7
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 7.0e-282 973.8 688 69.5
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 9.1e-282 973.4 688 69.5
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 2.9e-280 968.4 687 69.7
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 6.5e-280 967.2 687 69.0
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 1.9e-279 965.7 688 70.9
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 2.5e-279 965.3 682 68.8
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.5e-279 965.3 688 69.2
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 5.5e-279 964.1 688 69.2
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.1e-278 962.2 688 69.0
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 1.0e-277 959.9 689 68.2
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.4e-277 959.5 688 68.9
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 1.8e-277 959.1 686 68.5
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 5.2e-277 957.6 687 69.1
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 5.7e-276 954.1 692 68.4
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 1.3e-275 953.0 717 67.6
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 2.8e-275 951.8 682 69.1
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 4.8e-275 951.0 685 67.2
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.6e-273 946.0 686 67.8
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 2.7e-273 945.3 698 66.8
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 2.7e-273 945.3 672 68.8
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 4.5e-273 944.5 683 67.1
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 1.7e-272 942.6 686 66.5
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 2.9e-272 941.8 697 67.0
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 2.5e-271 938.7 654 69.6
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 4.2e-271 937.9 688 67.9
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 2.1e-270 935.6 687 67.0
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 1.7e-267 926.0 689 66.6
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 3.7e-267 924.9 686 66.3
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 1.1e-266 923.3 707 63.6
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 5.4e-266 921.0 685 66.1
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 9.1e-266 920.2 686 66.2
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 7.7e-265 917.1 691 67.1
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 1.0e-264 916.8 686 65.6
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 1.4e-261 906.4 718 63.6
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 9.2e-258 893.6 687 64.5
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 7.8e-257 890.6 689 65.7
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 4.7e-254 881.3 712 61.7
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 1.7e-251 872.8 582 73.4
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 3.1e-245 852.0 689 62.6
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 5.4e-242 841.3 652 64.6
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 6.6e-240 834.3 658 63.7
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 8.6e-240 833.9 685 60.3
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 2.1e-238 829.3 685 60.3
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 8.1e-238 827.4 674 59.9
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 1.8e-237 826.2 686 60.1
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 3.4e-236 822.0 682 59.1
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 4.4e-236 821.6 681 59.8
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 2.2e-235 819.3 702 60.4
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 2.9e-235 818.9 686 59.3
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 3.7e-235 818.5 682 59.4
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 3.7e-235 818.5 682 59.4
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 9.2e-234 813.9 677 63.8
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 5.1e-232 808.1 657 65.4
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 4.3e-231 805.1 668 59.9
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 1.3e-227 793.5 664 58.7
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 1.3e-224 783.5 606 65.0
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 3.1e-221 772.3 688 61.8
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 1.6e-217 760.0 666 58.9
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 1.7e-216 756.5 540 68.3
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 9.0e-213 744.2 675 60.9
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 9.0e-213 744.2 685 56.8
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 2.4e-205 719.5 710 53.8
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 6.5e-195 684.9 490 69.2
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 7.1e-194 681.4 569 62.2
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.2e-190 669.8 451 73.2
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 8.2e-182 641.3 647 52.6
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 2.0e-180 636.7 671 49.9
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 1.1e-178 630.9 466 65.9
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 7.2e-178 628.2 457 65.6
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 1.6e-177 627.1 691 46.0
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 2.3e-176 623.2 682 47.5
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 5.1e-176 622.1 582 55.8
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 1.7e-163 580.5 637 46.6
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 2.2e-163 580.1 512 57.0
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 1.8e-160 570.5 381 72.2
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 4.0e-144 516.2 686 40.5
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 4.0e-112 409.8 632 37.2
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 6.8e-112 409.1 296 71.3
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 1.9e-85 321.2 228 68.0
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 9.3e-77 292.4 190 72.6
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 3.0e-75 287.3 263 59.3
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 1.8e-67 261.5 329 46.8
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 4.3e-66 256.9 164 80.5
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 9.7e-66 255.8 211 61.6
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 1.4e-61 241.9 144 79.2
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 2.8e-49 201.1 194 58.8
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 4.8e-49 200.3 224 46.4
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 2.1e-44 184.9 524 28.4
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 5.2e-43 180.3 253 43.1
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 4.4e-42 177.2 173 57.8
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 3.7e-41 174.1 93 90.3
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 9.1e-40 169.5 126 66.7
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.2e-38 164.9 202 46.0
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 4.7e-36 157.1 104 72.1
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 3.4e-34 151.0 115 61.7
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 6.3e-33 146.7 93 73.1
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 3.8e-30 137.5 97 67.0
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 5.6e-29 133.7 201 38.8
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.0e-27 129.4 81 74.1
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 1.8e-27 128.6 94 61.7
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 2.0e-26 125.2 81 79.0
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 3.4e-26 124.4 95 65.3
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 4.9e-25 120.6 129 55.8
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 1.8e-24 118.6 76 73.7
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 4.6e-23 114.0 72 75.0
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 1.8e-19 102.1 55 89.1
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 8.9e-19 99.8 67 71.6
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 5.8e-18 97.1 133 45.9
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 2.4e-16 91.7 67 68.7
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 3.2e-16 91.3 184 33.7
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 4.6e-15 87.4 184 33.2
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 1.7e-14 85.5 259 30.5
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 1.1e-13 82.8 188 33.5
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 9.5e-13 79.7 48 77.1
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 3.4e-10 71.2 80 48.8
Oeu032522.1 Olea europaea HOM05D004484 ORTHO05D005370 3.7e-09 67.8 63 55.6
Hma1.2p1_1470F.1_g285600 Hydrangea macrophylla HOM05D000467 ORTHO05D011800 8.3e-09 66.6 53 66.0
AagrBONN_evm.TU.Sc2ySwM_368.3370 Anthoceros agrestis HOM05D004484 ORTHO05D005370 7.8e-07 60.1 111 31.5
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 7.8e-07 60.1 168 27.4


User provided reference genes

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