Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 0.0e+00 1609.7 794 100.0
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 0.0e+00 1327.0 758 86.1
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 0.0e+00 1321.2 776 85.3
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 0.0e+00 1204.9 758 78.2
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 0.0e+00 1202.2 755 79.6
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 0.0e+00 1172.9 758 75.3
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 0.0e+00 1172.9 784 75.5
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 0.0e+00 1162.5 785 74.6
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 0.0e+00 1135.2 782 71.7
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 9.1e-310 1066.6 753 70.5
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 1.1e-299 1033.1 802 63.2
Medtr0381s0010 Medicago truncatula HOM05D006129 ORTHO05D007446 4.3e-299 1031.2 610 83.4
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 4.7e-298 1027.7 809 62.4
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 1.8e-297 1025.8 705 69.4
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 1.8e-297 1025.8 757 65.1
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 3.1e-297 1025.0 701 67.8
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 1.2e-296 1023.1 705 68.8
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 2.0e-296 1022.3 785 63.9
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 1.9e-294 1015.8 761 64.8
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 1.9e-294 1015.8 789 63.5
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 8.6e-292 1006.9 742 64.4
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 4.3e-291 1004.6 812 63.7
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 5.6e-291 1004.2 713 66.9
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 5.8e-288 994.2 762 62.7
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 9.8e-288 993.4 786 64.1
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 2.2e-287 992.3 705 66.5
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 1.9e-286 989.2 711 67.5
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 6.0e-285 984.2 706 67.1
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 1.3e-284 983.0 706 67.1
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 6.6e-284 980.7 790 62.8
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 1.9e-283 979.2 701 66.5
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 3.3e-283 978.4 787 63.2
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 6.2e-282 974.2 658 68.2
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 1.1e-281 973.4 819 60.6
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 4.0e-281 971.5 770 62.1
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 5.2e-281 971.1 734 63.5
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 6.8e-281 970.7 693 66.5
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.5e-280 969.5 765 62.1
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 3.4e-280 968.4 701 65.8
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 4.9e-279 964.5 734 63.1
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 4.1e-278 961.4 736 63.0
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 9.2e-278 960.3 768 62.8
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 6.0e-277 957.6 755 62.3
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 6.6e-276 954.1 777 60.9
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 2.6e-272 942.2 698 63.5
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 4.4e-272 941.4 807 58.4
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 7.8e-269 930.6 755 60.9
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 1.0e-268 930.2 797 58.7
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 6.6e-268 927.5 772 60.8
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 1.1e-267 926.8 707 62.0
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 4.8e-266 921.4 782 59.1
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 4.0e-265 918.3 682 63.3
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 1.2e-264 916.8 797 57.8
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 7.6e-264 914.1 801 62.2
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 4.2e-262 908.3 759 58.5
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 3.0e-260 902.1 680 62.1
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 3.9e-260 901.7 705 63.5
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.9e-259 899.4 718 63.4
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 2.8e-258 895.6 682 62.0
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 3.6e-258 895.2 665 62.9
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 4.9e-255 884.8 786 57.5
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 1.6e-253 879.8 771 57.3
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 3.5e-253 878.6 686 61.1
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 1.8e-252 876.3 657 61.8
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 6.7e-252 874.4 779 57.3
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 3.3e-251 872.1 683 60.5
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 3.7e-250 868.6 807 55.0
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 1.8e-249 866.3 800 55.5
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 5.3e-249 864.8 771 55.6
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 1.2e-248 863.6 689 60.1
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 3.4e-248 862.1 657 60.9
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 1.1e-246 857.1 813 55.2
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 1.1e-246 857.1 809 53.4
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 1.4e-246 856.7 765 55.8
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 1.4e-246 856.7 765 55.8
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 1.4e-246 856.7 765 55.8
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 5.5e-246 854.7 782 55.0
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 3.5e-245 852.0 666 60.1
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 6.0e-245 851.3 688 59.0
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 1.3e-244 850.1 774 55.0
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 3.7e-242 842.0 660 60.6
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 1.8e-241 839.7 658 60.6
FAN20G2787 Fragaria x ananassa HOM05D006129 ORTHO05D007446 7.9e-237 824.3 614 64.7
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 2.8e-234 815.8 681 56.7
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 2.0e-232 809.7 661 57.5
PGSC0003DMG400026525 Solanum tuberosum HOM05D006129 ORTHO05D007446 1.0e-231 807.4 649 59.3
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 1.1e-230 803.9 697 56.4
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 9.4e-230 800.8 686 54.8
Sopen11g026560 Solanum pennellii HOM05D006129 ORTHO05D007446 2.3e-228 796.2 650 58.6
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 6.7e-228 794.7 593 64.9
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 2.4e-225 786.2 792 50.6
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 1.4e-222 776.9 797 51.1
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 4.7e-221 771.9 758 51.7
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 1.0e-220 770.8 785 50.2
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 1.8e-220 770.0 740 51.4
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 5.0e-215 751.9 607 58.5
TAR629G1168 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.9e-206 723.4 534 64.6
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 1.3e-199 700.7 805 48.1
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 2.1e-181 640.2 679 47.6
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 2.0e-176 623.6 571 56.4
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 1.4e-164 584.3 638 46.1
Cc02_g18440 Coffea canephora HOM05D006129 ORTHO05D007446 1.4e-140 504.6 455 54.1
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 2.6e-139 500.4 366 63.4
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 2.9e-122 443.7 487 48.3
TAR371G0992 Trochodendron aralioides HOM05D006129 ORTHO05D007446 8.8e-119 432.2 610 43.4
QL11p038542 Quercus lobata HOM05D006129 ORTHO05D007446 8.2e-109 399.1 304 66.4
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 7.7e-107 392.5 494 44.9
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 5.0e-90 336.7 360 53.3
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 3.0e-87 327.4 658 30.9
Atru.chr5.2826 Acer truncatum HOM05D006129 ORTHO05D007446 8.6e-82 309.3 284 57.7
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 7.2e-81 306.2 260 56.5
AagrBONN_evm.TU.Sc2ySwM_344.1734 Anthoceros agrestis HOM05D006129 ORTHO05D007446 2.8e-77 294.3 655 28.7
SMO356G0628 Selaginella moellendorffii HOM05D006129 ORTHO05D007446 5.4e-68 263.5 674 26.4
Mapoly0036s0055 Marchantia polymorpha HOM05D006129 ORTHO05D007446 8.6e-66 256.1 681 25.4
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 2.8e-56 224.6 658 24.8
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.3e-50 204.9 119 73.9
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 2.8e-48 198.0 176 60.2
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 3.6e-40 171.0 656 22.7
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 8.1e-40 169.9 99 73.7
Atru.chr5.2882 Acer truncatum HOM05D006129 ORTHO05D007446 5.6e-33 147.1 200 41.0
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 2.4e-23 115.2 149 45.6
CBR_g8924 Chara braunii HOM05D006129 ORTHO05D007446 2.5e-17 95.1 699 18.6
RcHm_v2.0_Chr6g0302241 Rosa chinensis HOM05D006129 ORTHO05D007446 2.6e-14 85.1 50 70.0
CBR_g19584 Chara braunii HOM05D006129 ORTHO05D007446 1.0e-13 83.2 619 20.0
Atru.chr5.2820 Acer truncatum HOM05D006129 ORTHO05D007446 2.9e-13 81.6 88 45.5
RcHm_v2.0_Chr1g0376021 Rosa chinensis HOM05D006129 ORTHO05D007446 4.2e-12 77.8 65 52.3
RcHm_v2.0_Chr2g0152801 Rosa chinensis HOM05D006129 ORTHO05D007446 1.6e-11 75.9 58 60.3
Thhalv10003592m.g Eutrema salsugineum HOM05D005764 ORTHO05D006600 2.2e-08 65.5 150 26.7
ECA248G1627 Erigeron canadensis HOM05D000001 ORTHO05D000003 4.8e-08 64.3 364 22.5
Lsat_1_v5_gn_6_71420 Lactuca sativa HOM05D001779 ORTHO05D001753 1.1e-07 63.2 157 27.4
CiPaw.01G035200 Carya illinoinensis HOM05D000891 ORTHO05D000761 1.8e-07 62.4 309 23.3
Sopen01g021730 Solanum pennellii HOM05D001779 ORTHO05D001753 1.8e-07 62.4 386 19.7
CiPaw.13G024800 Carya illinoinensis HOM05D000300 ORTHO05D000383 2.4e-07 62.0 151 28.5
Nitab4.5_0001453g0010 Nicotiana tabacum HOM05D000001 ORTHO05D000003 4.1e-07 61.2 275 24.0
CsaV3_7G026080 Cucumis sativus L. HOM05D001779 ORTHO05D001753 5.3e-07 60.8 202 25.7
Nn2g11881 Nelumbo nucifera HOM05D000001 ORTHO05D000003 5.3e-07 60.8 367 23.7
Eucgr.J00110 Eucalyptus grandis HOM05D000001 ORTHO05D000003 1.2e-06 59.7 370 20.5
Solyc02g085650.4 Solanum lycopersicum HOM05D001985 ORTHO05D000761 1.5e-06 59.3 247 23.5
MELO3C026641.2 Cucumis melo HOM05D000001 ORTHO05D000003 2.0e-06 58.9 287 23.3
Cfa002578 Carpinus fangiana HOM05D001779 ORTHO05D001753 2.6e-06 58.5 197 24.4
ECA248G3482 Erigeron canadensis HOM05D000300 ORTHO05D000383 2.6e-06 58.5 202 23.3
FvH4_4g12030 Fragaria vesca HOM05D006414 ORTHO05D007780 3.4e-06 58.2 175 24.6
Hma1.2p1_0727F.1_g209180 Hydrangea macrophylla HOM05D000001 ORTHO05D000003 3.4e-06 58.2 342 19.6
PGSC0003DMG400040010 Solanum tuberosum HOM05D000891 ORTHO05D000761 4.5e-06 57.8 246 24.0
Gorai.008G059500 Gossypium raimondii HOM05D000001 ORTHO05D000003 5.9e-06 57.4 217 24.4
Potri.004G020900 Populus trichocarpa HOM05D007956 ORTHO05D010152 5.9e-06 57.4 180 26.1
AL7G14330 Arabidopsis lyrata HOM05D000891 ORTHO05D000761 7.7e-06 57.0 214 23.4
Thhalv10027579m.g Eutrema salsugineum HOM05D000891 ORTHO05D000761 7.7e-06 57.0 235 22.6
BcaB03g12377 Brassica carinata HOM05D000891 ORTHO05D000761 1.0e-05 56.6 198 24.7


User provided reference genes

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