Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01263_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 6.6e-162 573.9 280 100.0
Medtr2g098660 Medicago truncatula HOM05D004358 ORTHO05D004960 3.1e-127 458.8 279 84.2
arahy.Tifrunner.gnm1.ann1.VZ0ARL Arachis hypogaea HOM05D004358 ORTHO05D004960 4.6e-107 391.7 259 74.5
Lj3g0017360 Lotus japonicus HOM05D004358 ORTHO05D004960 4.6e-107 391.7 239 80.3
Glyma.13G343700 Glycine max HOM05D004358 ORTHO05D004960 1.5e-105 386.7 266 72.9
Lj3g0009399 Lotus japonicus HOM05D004358 ORTHO05D004960 1.6e-104 383.3 249 75.5
Phvul.005G152500 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 8.2e-104 380.9 252 75.8
Glyma.11G128600 Glycine max HOM05D004358 ORTHO05D004960 1.4e-103 380.2 298 66.4
Psat1g007160 Pisum sativum HOM05D004358 ORTHO05D004960 2.4e-103 379.4 227 83.3
VMungo1127G0908 Vigna mungo HOM05D004358 ORTHO05D004960 4.0e-103 378.6 298 65.8
arahy.Tifrunner.gnm1.ann1.CJKM5C Arachis hypogaea HOM05D004358 ORTHO05D004960 1.2e-102 377.1 249 73.5
Lalb_Chr01g0003211 Lupinus albus HOM05D004358 ORTHO05D004960 2.6e-102 375.9 283 66.4
MD04G1007400 Malus domestica HOM05D004358 ORTHO05D004960 1.7e-101 373.2 245 73.5
Cfa015153 Carpinus fangiana HOM05D004358 ORTHO05D004960 8.4e-101 370.9 247 72.9
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 1.4e-100 370.2 268 67.5
Dinv22724 Davidia involucrata HOM05D004358 ORTHO05D004960 7.1e-100 367.9 245 72.7
Ca_20780_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 1.2e-99 367.1 298 64.4
Prupe.1G191600 Prunus persica HOM05D004358 ORTHO05D004960 1.2e-99 367.1 245 72.7
TAR362G1164 Trochodendron aralioides HOM05D004358 ORTHO05D004960 7.9e-99 364.4 266 66.9
Ciclev10020813m.g Citrus clementina HOM05D004358 ORTHO05D004960 2.3e-98 362.8 242 72.7
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 3.9e-98 362.1 310 61.3
TWI59G0142 Tripterygium wilfordii HOM05D004358 ORTHO05D004960 5.1e-98 361.7 247 71.7
CANSAT78G2120 Cannabis sativa HOM05D004358 ORTHO05D004960 6.7e-98 361.3 248 71.0
Potri.007G127600 Populus trichocarpa HOM05D004358 ORTHO05D004960 8.7e-98 360.9 247 71.3
GSVIVG01010748001 Vitis vinifera HOM05D004358 ORTHO05D004960 8.7e-98 360.9 258 69.0
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 1.1e-97 360.5 247 72.1
Sc13g0005360 Simmondsia chinensis HOM05D004358 ORTHO05D004960 1.1e-97 360.5 237 74.7
Duzib151G0384 Durio zibethinus HOM05D004358 ORTHO05D004960 1.5e-97 360.1 254 69.7
Actinidia39855 Actinidia chinensis HOM05D004358 ORTHO05D004960 1.9e-97 359.8 247 71.3
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 1.9e-97 359.8 265 66.8
Atru.chr3.1531 Acer truncatum HOM05D004358 ORTHO05D004960 2.5e-97 359.4 240 72.5
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 7.4e-97 357.8 240 71.7
TAR636G1513 Trochodendron aralioides HOM05D004358 ORTHO05D004960 7.4e-97 357.8 247 70.0
Phvul.011G055100 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 9.7e-97 357.5 258 70.5
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 1.3e-96 357.1 245 70.6
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 1.3e-96 357.1 245 70.6
COL.COLO4_02723 Corchorus olitorius HOM05D004358 ORTHO05D004960 1.6e-96 356.7 247 70.0
TPR.G34203 Trifolium pratense HOM05D004358 ORTHO05D004960 3.7e-96 355.5 249 70.3
MSTRG.6615 Avicennia marina HOM05D004358 ORTHO05D004960 4.8e-96 355.1 271 64.2
Ciclev10020816m.g Citrus clementina HOM05D004358 ORTHO05D004960 4.8e-96 355.1 254 68.5
arahy.Tifrunner.gnm1.ann1.98UW30 Arachis hypogaea HOM05D004358 ORTHO05D004960 1.8e-95 353.2 211 80.6
CiPaw.02G055200 Carya illinoinensis HOM05D004358 ORTHO05D004960 2.4e-95 352.8 272 64.3
Thhalv10007955m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 5.3e-95 351.7 247 71.3
C08p51540 Brassica napus HOM05D004358 ORTHO05D004960 6.9e-95 351.3 261 68.2
BolC8t52682H Brassica oleracea HOM05D004358 ORTHO05D004960 1.2e-94 350.5 246 70.7
Carub.0001s0527 Capsella rubella HOM05D004358 ORTHO05D004960 1.5e-94 350.1 245 69.4
Gorai.011G146700 Gossypium raimondii HOM05D004358 ORTHO05D004960 4.5e-94 348.6 244 70.1
Atru.chr3.1534 Acer truncatum HOM05D004358 ORTHO05D004960 7.7e-94 347.8 247 69.6
AL1G15860 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 1.7e-93 346.7 245 68.2
BcaC07g42102 Brassica carinata HOM05D004358 ORTHO05D004960 1.7e-93 346.7 246 69.1
CsaV3_4G003300 Cucumis sativus L. HOM05D004358 ORTHO05D004960 1.7e-93 346.7 245 69.0
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 1.7e-93 346.7 245 68.6
AT2G31450 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 2.2e-93 346.3 246 67.5
THA.LOC104827388 Tarenaya hassleriana HOM05D004358 ORTHO05D004960 2.2e-93 346.3 246 68.3
Cc00_g17220 Coffea canephora HOM05D004358 ORTHO05D004960 2.9e-93 345.9 281 63.7
PSO732G0278 Papaver somniferum HOM05D004358 ORTHO05D004960 2.9e-93 345.9 246 67.9
AT1G05900 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 5.0e-93 345.1 245 68.2
FAN07G2248 Fragaria x ananassa HOM05D004358 ORTHO05D004960 5.0e-93 345.1 269 64.7
Nitab4.5_0005570g0020 Nicotiana tabacum HOM05D004358 ORTHO05D004960 6.5e-93 344.7 246 69.1
A09p67250 Brassica napus HOM05D004358 ORTHO05D004960 1.9e-92 343.2 246 69.1
BraA09t42058Z Brassica rapa HOM05D004358 ORTHO05D005739 1.9e-92 343.2 246 69.1
Sopen06g029780 Solanum pennellii HOM05D004358 ORTHO05D004960 1.9e-92 343.2 271 63.8
unitig_8.g4603 Utricularia gibba HOM05D004358 ORTHO05D004960 1.9e-92 343.2 244 67.2
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 2.5e-92 342.8 246 66.7
PSO675G5046 Papaver somniferum HOM05D004358 ORTHO05D004960 2.5e-92 342.8 246 67.5
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 3.2e-92 342.4 246 66.3
MELO3C017721.2 Cucumis melo HOM05D004358 ORTHO05D004960 4.2e-92 342.0 249 68.3
Peaxi162Scf00375g00513 Petunia axillaris HOM05D004358 ORTHO05D004960 4.2e-92 342.0 268 64.9
AUR62002292 Chenopodium quinoa HOM05D004358 ORTHO05D004960 9.4e-92 340.9 275 61.8
PGR142G0453 Punica granatum HOM05D004358 ORTHO05D004960 9.4e-92 340.9 266 63.2
Solyc06g073400.3 Solanum lycopersicum HOM05D004358 ORTHO05D004960 9.4e-92 340.9 239 69.0
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 1.2e-91 340.5 245 66.5
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 1.2e-91 340.5 241 69.3
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 2.7e-91 339.3 245 66.5
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 2.7e-91 339.3 245 66.5
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 2.7e-91 339.3 245 66.5
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 2.7e-91 339.3 245 65.7
SalBow7G0323 Salvia bowleyana HOM05D004358 ORTHO05D004960 2.7e-91 339.3 294 58.8
CARHR125100 Cardamine hirsuta HOM05D004358 ORTHO05D004960 1.0e-90 337.4 248 64.9
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 2.3e-90 336.3 245 65.7
Carub.0004s1278 Capsella rubella HOM05D004358 ORTHO05D004960 5.1e-90 335.1 244 65.6
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 2.5e-89 332.8 246 65.9
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 2.5e-89 332.8 246 65.9
Ah.13g072910 Amaranthus hybridus HOM05D004358 ORTHO05D004960 5.7e-89 331.6 248 64.5
PSO732G0822 Papaver somniferum HOM05D004358 ORTHO05D004960 5.7e-89 331.6 246 65.4
Hund03152 Selenicereus undatus HOM05D004358 ORTHO05D004960 5.7e-89 331.6 239 66.9
PGSC0003DMG401006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 1.3e-88 330.5 251 64.1
Sopen09g031880 Solanum pennellii HOM05D004358 ORTHO05D004960 3.7e-88 328.9 250 62.4
ATR0686G198 Amborella trichopoda HOM05D004358 ORTHO05D004960 4.8e-88 328.6 237 64.6
CAN.G65.181 Capsicum annuum HOM05D004358 ORTHO05D004960 9.1e-87 324.3 239 65.7
AUR62015399 Chenopodium quinoa HOM05D004358 ORTHO05D004960 1.5e-86 323.6 253 62.8
CAN.G749.19 Capsicum annuum HOM05D004358 ORTHO05D004960 2.0e-86 323.2 240 65.4
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 4.5e-86 322.0 254 63.4
Peaxi162Scf00058g01717 Petunia axillaris HOM05D004358 ORTHO05D004960 2.2e-85 319.7 260 61.5
Rhsim02G0076600 Rhododendron simsii HOM05D004358 ORTHO05D004960 3.8e-85 318.9 336 52.1
Nn1g09578 Nelumbo nucifera HOM05D004358 ORTHO05D004960 7.2e-84 314.7 271 59.0
arahy.Tifrunner.gnm1.ann1.Z962T9 Arachis hypogaea HOM05D004358 ORTHO05D004960 1.6e-83 313.5 201 74.6
ECA236G3148 Erigeron canadensis HOM05D004358 ORTHO05D004960 7.9e-83 311.2 250 59.6
Lsat_1_v5_gn_8_80540 Lactuca sativa HOM05D004358 ORTHO05D004960 2.3e-82 309.7 233 64.4
Nitab4.5_0000941g0030 Nicotiana tabacum HOM05D004358 ORTHO05D004960 5.1e-82 308.5 270 59.3
Sabra07G0103600 Salix brachista HOM05D004358 ORTHO05D004960 1.5e-81 307.0 250 62.8
SHI24906 Sapria himalayana HOM05D004358 ORTHO05D004960 1.5e-81 307.0 296 53.7
vmacro15647 Vaccinium macrocarpon HOM05D004358 ORTHO05D004960 2.0e-81 306.6 301 54.8
Gohir.D10G133000 Gossypium hirsutum HOM05D004358 ORTHO05D004960 3.3e-81 305.8 241 63.5
Haze_01520 Corylus avellana HOM05D004358 ORTHO05D004960 7.4e-81 304.7 187 76.5
QL10p048514 Quercus lobata HOM05D004358 ORTHO05D004960 1.3e-80 303.9 186 76.3
SGA_v2.0_scaffold181G39728 Striga asiatica HOM05D004358 ORTHO05D004960 6.3e-80 301.6 255 59.2
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 1.1e-79 300.8 231 63.6
EL10Ac3g05922 Beta vulgaris HOM05D004358 ORTHO05D004960 1.8e-79 300.1 251 60.6
CSS0013619 Camellia sinensis var. sinensis HOM05D004358 ORTHO05D004960 9.1e-79 297.7 246 61.8
Thecc.04G185400 Theobroma cacao HOM05D004358 ORTHO05D004960 1.5e-78 297.0 257 60.7
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 1.7e-77 293.5 242 61.2
Zm00001eb406830 Zea mays HOM05D004358 ORTHO05D004960 1.1e-76 290.8 238 57.6
CARHR005460 Cardamine hirsuta HOM05D004358 ORTHO05D004960 4.2e-76 288.9 185 73.0
Aqoxy7G00191 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 9.4e-76 287.7 241 59.8
ClCG07G015600 Citrullus lanatus HOM05D004358 ORTHO05D004960 9.4e-76 287.7 198 68.7
SMO347G0587 Selaginella moellendorffii HOM05D004358 ORTHO05D004960 2.1e-75 286.6 232 61.2
ECA236G1172 Erigeron canadensis HOM05D004358 ORTHO05D004960 2.7e-75 286.2 205 67.8
Eucgr.H00376 Eucalyptus grandis HOM05D004358 ORTHO05D004960 1.5e-73 280.4 172 75.6
DCAR_028143 Daucus carota HOM05D004358 ORTHO05D004960 2.0e-73 280.0 186 68.8
Mapoly0058s0068 Marchantia polymorpha HOM05D004358 ORTHO05D004960 1.7e-72 276.9 266 51.1
Solyc09g083003.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 1.1e-71 274.2 177 70.1
CBR_g29622 Chara braunii HOM05D004358 ORTHO05D004960 3.6e-67 259.2 244 53.7
Nitab4.5_0003132g0140 Nicotiana tabacum HOM05D004358 ORTHO05D004960 5.2e-66 255.4 246 56.1
Mapoly0058s0067 Marchantia polymorpha HOM05D004358 ORTHO05D004960 8.8e-66 254.6 249 51.4
Migut.M00111 Erythranthe guttata HOM05D004358 ORTHO05D004960 2.8e-64 249.6 197 62.9
Sp1g04740 Schrenkiella parvula HOM05D004358 ORTHO05D004960 2.7e-62 243.0 231 56.7
SalBow7G1435 Salvia bowleyana HOM05D004358 ORTHO05D004960 1.8e-58 230.3 129 76.7
Ca_18838_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 3.0e-58 229.6 114 94.7
Haze_27447 Corylus avellana HOM05D004358 ORTHO05D004960 4.4e-49 199.1 234 44.4
Gohir.A10G133700 Gossypium hirsutum HOM05D004358 ORTHO05D004960 1.7e-45 187.2 144 66.7
Pp3c17_17810 Physcomitrium patens HOM05D004358 ORTHO05D004960 3.1e-42 176.4 239 40.6
Glyma.12G053100 Glycine max HOM05D004358 ORTHO05D004960 6.8e-42 175.3 110 73.6
PGSC0003DMG401026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 2.0e-41 173.7 107 73.8
CAN.G80.26 Capsicum annuum HOM05D004358 ORTHO05D004960 3.4e-41 172.9 245 42.0
Cfa026201 Carpinus fangiana HOM05D004358 ORTHO05D004960 1.3e-40 171.0 231 41.6
AagrBONN_evm.TU.Sc2ySwM_368.679 Anthoceros agrestis HOM05D004358 ORTHO05D004960 3.9e-37 159.5 195 44.6
BcaC07g42101 Brassica carinata HOM05D004358 ORTHO05D004960 3.6e-35 152.9 99 74.7
DCAR_028139 Daucus carota HOM05D004358 ORTHO05D004960 2.4e-31 140.2 75 77.3
Mapoly0058s0064 Marchantia polymorpha HOM05D004358 ORTHO05D004960 5.2e-26 122.5 92 56.5
Glyma.15G030650 Glycine max HOM05D004358 ORTHO05D004960 1.7e-24 117.5 93 66.7
Cpa.g.sc41.25 Carica papaya HOM05D004358 ORTHO05D004960 3.0e-21 106.7 84 63.1
Cpa.g.sc41.31 Carica papaya HOM05D004358 ORTHO05D004960 9.6e-20 101.7 74 64.9
Rhsim02G0076400 Rhododendron simsii HOM05D004358 ORTHO05D004960 2.6e-17 93.6 92 50.0
Cre17.g732050 Chlamydomonas reinhardtii HOM05D004358 ORTHO05D004960 2.1e-14 84.0 202 29.7
Ca_29315_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 5.1e-13 79.3 142 32.4
PGSC0003DMG402006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 6.6e-13 79.0 56 60.7
PRCOL_00001550 Prasinoderma coloniale HOM05D004358 ORTHO05D004960 3.6e-11 73.2 184 29.9
SalBow1G3505 Salvia bowleyana HOM05D004358 ORTHO05D004960 6.2e-11 72.4 94 45.7
Gohir.D08G144100 Gossypium hirsutum HOM05D004358 ORTHO05D004960 6.9e-10 68.9 65 55.4
MCO12G048 Micromonas commoda HOM05D006570 ORTHO05D008193 1.2e-09 68.2 229 27.5
Lj3A203T17 Lonicera japonica HOM05D004358 ORTHO05D004960 4.4e-09 66.2 82 46.3
QL10p048520 Quercus lobata HOM05D004358 ORTHO05D004960 4.4e-09 66.2 62 59.7
PGSC0003DMG402026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 4.4e-09 66.2 60 58.3
Thhalv10024575m.g Eutrema salsugineum HOM05D006570 ORTHO05D008193 2.9e-08 63.5 214 29.4
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 2.9e-08 63.5 187 29.4
PRCOL_00001086 Prasinoderma coloniale HOM05D006570 ORTHO05D008193 2.9e-08 63.5 200 26.5
Solyc09g083007.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 2.9e-08 63.5 60 56.7
Lj3C203G5 Lonicera japonica HOM05D009066 ORTHO05D004960 4.9e-08 62.8 37 67.6
Mapoly0043s0062 Marchantia polymorpha HOM05D006570 ORTHO05D008193 6.4e-08 62.4 212 29.2
Cre02.g082000 Chlamydomonas reinhardtii HOM05D006570 ORTHO05D008193 1.4e-07 61.2 160 28.1
CAN.G541.14 Capsicum annuum HOM05D004358 ORTHO05D004960 4.2e-07 59.7 62 53.2
Duzib133G0843 Durio zibethinus HOM05D006570 ORTHO05D008193 2.1e-06 57.4 187 26.7
A04p09180 Brassica napus HOM05D006570 ORTHO05D008193 2.7e-06 57.0 215 27.9
Carub.0007s3008 Capsella rubella HOM05D006570 ORTHO05D008193 3.5e-06 56.6 194 27.3
Sp7g09050 Schrenkiella parvula HOM05D006570 ORTHO05D008193 4.6e-06 56.2 214 27.6
AT4G12740 Arabidopsis thaliana HOM05D006570 ORTHO05D008193 6.0e-06 55.8 188 28.2
AL9U11910 Arabidopsis lyrata HOM05D006570 ORTHO05D008193 7.9e-06 55.5 188 28.2


User provided reference genes

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