Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 0.0e+00 1702.6 877 100.0
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 0.0e+00 1699.5 877 99.9
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 0.0e+00 1228.0 805 78.4
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 0.0e+00 1170.6 818 75.1
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 0.0e+00 1161.0 804 72.1
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 0.0e+00 1140.9 848 71.1
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 0.0e+00 1140.6 777 75.0
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 0.0e+00 1135.6 838 69.3
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 0.0e+00 1127.1 809 72.6
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 0.0e+00 1125.5 822 69.3
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 0.0e+00 1124.4 805 71.9
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 0.0e+00 1117.8 823 69.0
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 0.0e+00 1117.1 840 69.2
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 0.0e+00 1113.6 841 68.5
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 0.0e+00 1101.7 835 68.0
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 0.0e+00 1091.6 811 68.7
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 0.0e+00 1089.3 788 70.1
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 0.0e+00 1082.4 800 69.5
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 0.0e+00 1075.1 834 66.9
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 1.6e-310 1069.3 852 66.0
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 1.6e-310 1069.3 731 72.2
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 1.2e-305 1053.1 796 66.5
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 2.4e-303 1045.4 780 68.3
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 7.0e-303 1043.9 797 65.4
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 1.2e-302 1043.1 801 67.0
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 5.9e-302 1040.8 844 64.1
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 5.9e-302 1040.8 774 67.7
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 7.8e-302 1040.4 838 63.0
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.9e-301 1038.5 737 72.9
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 1.1e-300 1036.6 799 66.6
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 1.9e-300 1035.8 801 66.5
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 2.5e-300 1035.4 793 66.8
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 9.5e-300 1033.5 837 65.5
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 1.8e-298 1029.2 659 74.1
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 6.4e-296 1020.8 799 64.2
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.6e-294 1016.1 777 66.0
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 8.6e-293 1010.4 757 66.3
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 1.5e-292 1009.6 784 64.4
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 4.3e-292 1008.1 774 66.3
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 7.3e-292 1007.3 777 65.0
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 1.8e-290 1002.7 730 68.8
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 8.9e-290 1000.3 773 65.2
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.2e-289 1000.0 757 65.7
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 4.4e-289 998.0 700 68.7
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 4.9e-288 994.6 797 63.7
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 1.9e-284 982.6 803 63.3
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 3.3e-284 981.9 803 64.1
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 7.3e-284 980.7 829 61.8
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 1.4e-282 976.5 806 62.3
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 1.8e-282 976.1 705 67.9
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 4.4e-281 971.5 706 67.1
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 7.5e-281 970.7 821 61.5
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 8.3e-280 967.2 782 63.4
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 2.4e-279 965.7 759 62.3
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 9.2e-279 963.8 769 63.6
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 1.6e-278 963.0 704 67.8
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 2.1e-278 962.6 679 67.9
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 3.3e-276 955.3 796 61.7
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 1.2e-275 953.4 688 66.3
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 1.2e-275 953.4 738 63.7
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 1.1e-274 950.3 801 61.2
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 6.8e-274 947.6 686 66.2
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 2.0e-273 946.0 688 66.6
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 2.2e-272 942.6 831 58.7
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 2.9e-272 942.2 814 59.0
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 1.0e-269 933.7 789 62.0
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 1.0e-269 933.7 846 57.6
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 1.9e-268 929.5 753 61.1
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 3.3e-268 928.7 780 59.7
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 1.1e-266 923.7 804 58.8
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 1.8e-266 922.9 766 59.9
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 3.1e-266 922.2 851 56.3
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 5.3e-266 921.4 753 61.5
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 2.7e-262 909.1 766 59.1
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 1.0e-261 907.1 707 63.9
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 1.7e-261 906.4 761 59.0
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 1.7e-261 906.4 761 59.0
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 1.7e-261 906.4 761 59.0
PGSC0003DMG400026525 Solanum tuberosum HOM05D006129 ORTHO05D007446 1.1e-260 903.7 655 67.6
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 2.8e-259 899.0 720 60.8
Sopen11g026560 Solanum pennellii HOM05D006129 ORTHO05D007446 6.9e-258 894.4 662 67.2
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 9.0e-258 894.0 767 58.9
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 3.9e-253 878.6 746 58.0
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 3.5e-246 855.5 693 60.5
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 4.6e-246 855.1 748 57.2
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 1.0e-245 854.0 810 55.8
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 1.3e-245 853.6 734 57.6
FAN20G2787 Fragaria x ananassa HOM05D006129 ORTHO05D007446 2.5e-244 849.4 619 68.0
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 5.5e-239 831.6 565 72.9
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 7.9e-238 827.8 799 54.4
TAR629G1168 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.9e-236 823.2 546 74.0
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 5.7e-236 821.6 695 56.7
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 6.9e-234 814.7 741 55.6
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 2.6e-233 812.8 667 59.8
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 4.3e-228 795.4 803 51.3
Medtr0381s0010 Medicago truncatula HOM05D006129 ORTHO05D007446 1.8e-221 773.5 608 62.2
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 4.1e-218 762.3 808 53.8
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 1.5e-191 674.1 564 63.8
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 4.7e-190 669.1 678 48.8
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 1.5e-188 664.1 651 53.0
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 1.1e-175 621.3 702 48.3
Cc02_g18440 Coffea canephora HOM05D006129 ORTHO05D007446 1.5e-159 567.8 467 62.3
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 8.9e-157 558.5 414 65.2
TAR371G0992 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.5e-135 487.3 760 42.0
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 1.4e-133 481.5 538 50.7
QL11p038542 Quercus lobata HOM05D006129 ORTHO05D007446 7.7e-116 422.5 304 70.1
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.5e-108 398.3 410 57.1
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 5.9e-108 396.4 490 48.2
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 4.8e-94 350.1 663 31.8
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 1.1e-90 339.0 311 57.2
Atru.chr5.2826 Acer truncatum HOM05D006129 ORTHO05D007446 2.8e-86 324.3 387 49.4
AagrBONN_evm.TU.Sc2ySwM_344.1734 Anthoceros agrestis HOM05D006129 ORTHO05D007446 6.8e-80 303.1 646 29.7
SMO356G0628 Selaginella moellendorffii HOM05D006129 ORTHO05D007446 4.4e-71 273.9 786 26.7
Mapoly0036s0055 Marchantia polymorpha HOM05D006129 ORTHO05D007446 1.8e-64 251.9 670 26.6
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 7.8e-60 236.5 229 56.8
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 2.8e-57 228.0 699 25.5
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 2.4e-45 188.3 171 55.0
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 1.9e-42 178.7 129 65.1
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 6.2e-41 173.7 691 23.9
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 7.6e-31 140.2 215 43.3
Atru.chr5.2882 Acer truncatum HOM05D006129 ORTHO05D007446 1.3e-30 139.4 198 44.9
Atru.chr5.2820 Acer truncatum HOM05D006129 ORTHO05D007446 9.0e-16 90.1 181 36.5
CBR_g8924 Chara braunii HOM05D006129 ORTHO05D007446 1.2e-15 89.7 729 18.2
RcHm_v2.0_Chr6g0302241 Rosa chinensis HOM05D006129 ORTHO05D007446 2.6e-15 88.6 61 65.6
RcHm_v2.0_Chr1g0376021 Rosa chinensis HOM05D006129 ORTHO05D007446 3.2e-13 81.6 51 72.5
RcHm_v2.0_Chr2g0152801 Rosa chinensis HOM05D006129 ORTHO05D007446 2.1e-12 79.0 53 73.6
TAR371G0388 Trochodendron aralioides HOM05D001464 ORTHO05D002836 1.1e-10 73.2 55 61.8
AagrBONN_evm.TU.Sc2ySwM_362.2053 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.3e-08 64.3 429 19.6
Pp3c2_12230 Physcomitrium patens HOM05D000001 ORTHO05D000003 1.5e-07 62.8 387 20.7
RcHm_v2.0_Chr3g0448241 Rosa chinensis HOM05D000001 ORTHO05D000003 2.0e-07 62.4 389 21.1
AagrBONN_evm.TU.Sc2ySwM_228.1156 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.4e-07 61.6 363 22.0
CANSAT01G2728 Cannabis sativa HOM05D000001 ORTHO05D000003 3.4e-07 61.6 206 29.1
PGR031G1955 Punica granatum HOM05D000001 ORTHO05D000003 4.5e-07 61.2 266 24.4
AagrBONN_evm.TU.Sc2ySwM_228.880 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.6e-07 60.5 335 22.1
FAN07G0233 Fragaria x ananassa HOM05D008684 ORTHO05D010796 7.6e-07 60.5 421 19.2
AagrBONN_evm.TU.Sc2ySwM_362.2108 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.3e-06 59.7 346 21.4
AagrBONN_evm.TU.Sc2ySwM_368.3189 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.3e-06 59.7 455 21.8
AagrBONN_evm.TU.Sc2ySwM_369.322 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.3e-06 59.7 247 25.9
FAN17G1880 Fragaria x ananassa HOM05D006414 ORTHO05D007780 1.3e-06 59.7 103 30.1
AagrBONN_evm.TU.Sc2ySwM_368.2006__2007 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.2e-06 58.9 335 22.7
Duzib177G0483 Durio zibethinus HOM05D000001 ORTHO05D000003 2.9e-06 58.5 170 28.8
PGR119G0130 Punica granatum HOM05D000001 ORTHO05D000003 3.8e-06 58.2 229 26.2
AagrBONN_evm.TU.Sc2ySwM_368.2311__2312 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.0e-06 57.8 354 22.3
AagrBONN_evm.TU.Sc2ySwM_362.870 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.5e-06 57.4 327 22.9
AagrBONN_evm.TU.Sc2ySwM_368.2160 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.5e-06 57.4 381 23.4
Atru.chr4.307 Acer truncatum HOM05D006414 ORTHO05D007780 8.5e-06 57.0 169 25.4
AagrBONN_evm.TU.Sc2ySwM_228.4318 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.5e-06 57.0 321 24.6


User provided reference genes

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