Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042552 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D004671 8.4e-57 223.4 108 100.0
GSVIVG01026461001 Vitis vinifera HOM05D002182 ORTHO05D004671 2.3e-30 135.6 66 98.5
Dinv35485 Davidia involucrata HOM05D002182 ORTHO05D004671 8.8e-30 133.7 66 97.0
PGR102G1182 Punica granatum HOM05D002182 ORTHO05D004671 1.1e-29 133.3 66 95.5
TAR376G0522 Trochodendron aralioides HOM05D002182 ORTHO05D004671 1.9e-29 132.5 71 91.5
Atru.chr4.980 Acer truncatum HOM05D002182 ORTHO05D004671 2.5e-29 132.1 66 93.9
CSS0041549 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D004671 3.3e-29 131.7 66 95.5
Eucgr.H05141 Eucalyptus grandis HOM05D002182 ORTHO05D004671 3.3e-29 131.7 66 95.5
RcHm_v2.0_Chr2g0122231 Rosa chinensis HOM05D002182 ORTHO05D004671 4.3e-29 131.3 66 95.5
COL.COLO4_35815 Corchorus olitorius HOM05D002182 ORTHO05D004671 5.7e-29 131.0 66 93.9
Gohir.A11G057700 Gossypium hirsutum HOM05D002182 ORTHO05D004671 5.7e-29 131.0 66 93.9
MBI07_g47060_MAGBIO Magnolia biondii HOM05D002182 ORTHO05D004671 5.7e-29 131.0 66 92.4
vmacro12744 Vaccinium macrocarpon HOM05D002182 ORTHO05D004671 5.7e-29 131.0 73 87.7
AUR62006857 Chenopodium quinoa HOM05D002182 ORTHO05D004671 7.4e-29 130.6 66 93.9
Lj4C830T7 Lonicera japonica HOM05D002182 ORTHO05D004671 7.4e-29 130.6 66 93.9
Nn5g28440 Nelumbo nucifera HOM05D002182 ORTHO05D004671 7.4e-29 130.6 66 95.5
CANSAT01G2275 Cannabis sativa HOM05D002182 ORTHO05D004671 9.7e-29 130.2 69 89.9
Sed0010212 Sechium edule HOM05D002182 ORTHO05D004671 9.7e-29 130.2 66 92.4
Hund21801 Selenicereus undatus HOM05D002182 ORTHO05D004671 9.7e-29 130.2 66 92.4
Duzib264G0915 Durio zibethinus HOM05D002182 ORTHO05D004671 1.3e-28 129.8 66 92.4
ClCG10G017010 Citrullus lanatus HOM05D002182 ORTHO05D004671 2.2e-28 129.0 66 90.9
CsaV3_3G039390 Cucumis sativus L. HOM05D002182 ORTHO05D004671 2.2e-28 129.0 66 90.9
FvH4_1g24710 Fragaria vesca HOM05D002182 ORTHO05D004671 2.2e-28 129.0 66 92.4
FAN19G2097 Fragaria x ananassa HOM05D002182 ORTHO05D004671 2.2e-28 129.0 66 92.4
FAN26G0537 Fragaria x ananassa HOM05D002182 ORTHO05D004671 2.2e-28 129.0 66 92.4
Potri.005G067100 Populus trichocarpa HOM05D002182 ORTHO05D004671 2.2e-28 129.0 66 92.4
Ah.06g191020 Amaranthus hybridus HOM05D002182 ORTHO05D004671 2.8e-28 128.6 66 92.4
arahy.Tifrunner.gnm1.ann1.K5KUZ3 Arachis hypogaea HOM05D002182 ORTHO05D004671 2.8e-28 128.6 66 90.9
arahy.Tifrunner.gnm1.ann1.XVSB6Y Arachis hypogaea HOM05D002182 ORTHO05D004671 2.8e-28 128.6 66 90.9
Gorai.007G066700 Gossypium raimondii HOM05D002182 ORTHO05D004671 2.8e-28 128.6 66 90.9
Thecc.01G137400 Theobroma cacao HOM05D002182 ORTHO05D004671 2.8e-28 128.6 66 92.4
EL10Ac4g09621 Beta vulgaris HOM05D002182 ORTHO05D004671 3.7e-28 128.3 66 92.4
CiPaw.04G079900 Carya illinoinensis HOM05D002182 ORTHO05D004671 3.7e-28 128.3 66 92.4
AUR62000512 Chenopodium quinoa HOM05D002182 ORTHO05D004671 3.7e-28 128.3 65 93.8
Ciclev10003112m.g Citrus clementina HOM05D002182 ORTHO05D004671 3.7e-28 128.3 66 90.9
Manes.13G078050 Manihot esculenta HOM05D002182 ORTHO05D004671 3.7e-28 128.3 66 90.9
Aqoxy5G02289 Aquilegia oxysepala HOM05D002182 ORTHO05D004671 6.3e-28 127.5 66 89.4
QL10p041326 Quercus lobata HOM05D002182 ORTHO05D004671 6.3e-28 127.5 66 90.9
Sabra05G0055200 Salix brachista HOM05D002182 ORTHO05D004671 6.3e-28 127.5 67 89.6
Zm00001eb005010 Zea mays HOM05D002182 ORTHO05D004671 6.3e-28 127.5 66 90.9
MELO3C009682.2 Cucumis melo HOM05D002182 ORTHO05D004671 8.2e-28 127.1 66 89.4
Gohir.D11G061900 Gossypium hirsutum HOM05D002182 ORTHO05D004671 8.2e-28 127.1 66 90.9
MD15G1134700 Malus domestica HOM05D002182 ORTHO05D004671 8.2e-28 127.1 66 90.9
Prupe.4G275500 Prunus persica HOM05D002182 ORTHO05D004671 8.2e-28 127.1 66 90.9
CAN.G163.2 Capsicum annuum HOM05D002182 ORTHO05D004671 1.1e-27 126.7 66 92.4
Sopen05g009910 Solanum pennellii HOM05D002182 ORTHO05D004671 1.1e-27 126.7 66 92.4
Os03g0165000 Oryza sativa ssp. japonica HOM05D002182 ORTHO05D004671 2.4e-27 125.6 71 83.1
Sc16g0009510 Simmondsia chinensis HOM05D002182 ORTHO05D004671 2.4e-27 125.6 71 84.5
HPP92_005922 Vanilla planifolia HOM05D002182 ORTHO05D004671 2.4e-27 125.6 66 89.4
VMungo1309G0220 Vigna mungo HOM05D002182 ORTHO05D004671 2.4e-27 125.6 66 89.4
Migut.H00803 Erythranthe guttata HOM05D002182 ORTHO05D004671 3.1e-27 125.2 66 90.9
Nitab4.5_0000120g0160 Nicotiana tabacum HOM05D002182 ORTHO05D004671 3.1e-27 125.2 66 90.9
AL8G41160 Arabidopsis lyrata HOM05D002182 ORTHO05D004671 4.1e-27 124.8 66 90.9
THA.LOC104818422 Tarenaya hassleriana HOM05D002182 ORTHO05D004671 4.1e-27 124.8 66 90.9
Thhalv10003618m.g Eutrema salsugineum HOM05D002182 ORTHO05D004671 5.3e-27 124.4 66 90.9
FAN23G2071 Fragaria x ananassa HOM05D002182 ORTHO05D004671 5.3e-27 124.4 66 92.4
Solyc05g014730.1 Solanum lycopersicum HOM05D002182 ORTHO05D004671 5.3e-27 124.4 66 90.9
unitig_62.g23374 Utricularia gibba HOM05D002182 ORTHO05D004671 5.3e-27 124.4 66 90.9
TWI79G1433 Tripterygium wilfordii HOM05D002182 ORTHO05D004671 6.9e-27 124.0 66 90.9
AT5G63920 Arabidopsis thaliana HOM05D002182 ORTHO05D004671 9.1e-27 123.6 66 89.4
Lj1g0008046 Lotus japonicus HOM05D002182 ORTHO05D004671 9.1e-27 123.6 66 87.9
PSO384G2582 Papaver somniferum HOM05D002182 ORTHO05D004671 9.1e-27 123.6 66 87.9
PSO443G0075 Papaver somniferum HOM05D002182 ORTHO05D004671 9.1e-27 123.6 66 87.9
ATR1001G007 Amborella trichopoda HOM05D002182 ORTHO05D004671 1.2e-26 123.2 66 89.4
Carub.0008s2470 Capsella rubella HOM05D002182 ORTHO05D004671 1.2e-26 123.2 66 89.4
Lalb_Chr11g0068591 Lupinus albus HOM05D002182 ORTHO05D004671 1.2e-26 123.2 66 89.4
TPR.G33581 Trifolium pratense HOM05D002182 ORTHO05D004671 1.2e-26 123.2 66 87.9
Phvul.009G154850 Phaseolus vulgaris HOM05D002182 ORTHO05D004671 1.5e-26 122.9 66 89.4
BcaB07g29709 Brassica carinata HOM05D002182 ORTHO05D004671 2.0e-26 122.5 66 89.4
BcaC03g18232 Brassica carinata HOM05D002182 ORTHO05D004671 2.0e-26 122.5 66 89.4
A02p43050 Brassica napus HOM05D002182 ORTHO05D004671 2.0e-26 122.5 66 89.4
C02p63010 Brassica napus HOM05D002182 ORTHO05D004671 2.0e-26 122.5 66 89.4
BolC2t12375H Brassica oleracea HOM05D002182 ORTHO05D004671 2.0e-26 122.5 66 89.4
BraA02t09226Z Brassica rapa HOM05D002182 ORTHO05D004671 2.0e-26 122.5 66 89.4
Ca_16979_v3 Cicer arietinum L. HOM05D002182 ORTHO05D004671 2.0e-26 122.5 66 87.9
Sp2g26990 Schrenkiella parvula HOM05D002182 ORTHO05D004671 2.0e-26 122.5 66 89.4
SGA_v2.0_scaffold54G19590 Striga asiatica HOM05D002182 ORTHO05D004671 2.6e-26 122.1 66 87.9
Aa31LG1G17970 Aethionema arabicum HOM05D002182 ORTHO05D004671 3.4e-26 121.7 66 87.9
Psat5g060640 Pisum sativum HOM05D002182 ORTHO05D004671 3.4e-26 121.7 66 86.4
DCAR_023889 Daucus carota HOM05D002182 ORTHO05D004671 1.3e-25 119.8 70 84.3
Mapoly0113s0011 Marchantia polymorpha HOM05D002182 ORTHO05D004671 1.9e-24 115.9 66 81.8
Cc07_g19240 Coffea canephora HOM05D002182 ORTHO05D004671 3.2e-24 115.2 66 83.3
AagrBONN_evm.TU.Sc2ySwM_228.5819 Anthoceros agrestis HOM05D002182 ORTHO05D004671 9.4e-24 113.6 66 81.8
Nitab4.5_0001277g0030 Nicotiana tabacum HOM05D002182 ORTHO05D004671 9.4e-24 113.6 60 90.0
Lsat_1_v5_gn_1_78841 Lactuca sativa HOM05D002182 ORTHO05D004671 2.1e-23 112.5 66 81.8
SHI36072 Sapria himalayana HOM05D002182 ORTHO05D004671 6.1e-23 110.9 76 73.7
Medtr3g096640 Medicago truncatula HOM05D002182 ORTHO05D004671 1.4e-22 109.8 66 81.8
SMO114G0082 Selaginella moellendorffii HOM05D002182 ORTHO05D004671 1.8e-22 109.4 66 80.3
Pp3c21_9710 Physcomitrium patens HOM05D002182 ORTHO05D004671 2.3e-22 109.0 71 77.5
Glyma.06G155600 Glycine max HOM05D002182 ORTHO05D004671 9.7e-21 103.6 68 77.9
HanXRQChr01g0016921 Helianthus annuus HOM05D002182 ORTHO05D004671 1.3e-20 103.2 66 75.8
CBR_g74 Chara braunii HOM05D002182 ORTHO05D004671 1.7e-17 92.8 66 65.2
Actinidia20028 Actinidia chinensis HOM05D002182 ORTHO05D004671 6.7e-14 80.9 38 97.4
PRCOL_00003192 Prasinoderma coloniale HOM05D002182 ORTHO05D004671 1.1e-13 80.1 65 58.5
Cfa002178 Carpinus fangiana HOM05D002182 ORTHO05D004671 4.8e-12 74.7 34 100.0
Ah.06g191010 Amaranthus hybridus HOM05D002617 ORTHO05D009035 8.2e-12 73.9 36 91.7
MCO11G433 Micromonas commoda HOM05D002182 ORTHO05D004671 7.2e-08 60.8 72 48.6
HanXRQChr02g0037311 Helianthus annuus HOM05D002182 ORTHO05D004671 9.4e-08 60.5 69 49.3
CARHR277840 Cardamine hirsuta HOM05D002182 ORTHO05D004671 8.0e-07 57.4 32 84.4
MSTRG.420 Avicennia marina HOM05D002182 ORTHO05D008382 1.0e-06 57.0 58 44.8
Solyc09g097880.4 Solanum lycopersicum HOM05D002182 ORTHO05D008382 1.4e-06 56.6 58 44.8
Sopen09g035820 Solanum pennellii HOM05D002182 ORTHO05D008382 1.4e-06 56.6 58 44.8
SGA_v2.0_scaffold128G34129 Striga asiatica HOM05D002182 ORTHO05D008382 2.3e-06 55.8 60 41.7
CAN.G1325.5 Capsicum annuum HOM05D002182 ORTHO05D008382 3.0e-06 55.5 58 44.8
Dinv32179 Davidia involucrata HOM05D002182 ORTHO05D008382 3.0e-06 55.5 58 44.8
Peaxi162Scf00286g00722 Petunia axillaris HOM05D002182 ORTHO05D008382 3.0e-06 55.5 58 44.8
PGSC0003DMG402016626 Solanum tuberosum HOM05D002182 ORTHO05D008382 3.0e-06 55.5 58 43.1
Cc03_g09640 Coffea canephora HOM05D002182 ORTHO05D008382 4.0e-06 55.1 60 45.0
TWI63G1391 Tripterygium wilfordii HOM05D002182 ORTHO05D008382 4.0e-06 55.1 62 43.5
MD04G1023600 Malus domestica HOM05D002182 ORTHO05D008382 5.2e-06 54.7 62 40.3
HPP92_011791 Vanilla planifolia HOM05D002182 ORTHO05D008382 5.2e-06 54.7 58 44.8
Nitab4.5_0000309g0290 Nicotiana tabacum HOM05D002182 ORTHO05D008382 6.7e-06 54.3 58 43.1
Nitab4.5_0004869g0010 Nicotiana tabacum HOM05D002182 ORTHO05D008382 6.7e-06 54.3 58 43.1
Migut.N00431 Erythranthe guttata HOM05D002182 ORTHO05D008382 8.8e-06 53.9 60 40.0


User provided reference genes

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