Gene: Nitab4.5_0004869g0010
General Information
Structural Information
- Species Nicotiana tabacum
- Gene Identifier Nitab4.5_0004869g0010
- Transcript Identifier Nitab4.5_0004869g0010.1
- Gene Type Coding gene
- Location Nitab4.5_0004869 : 178512-192719 : positive
Gene Family Information
- ID HOM05D002182
- #Genes/#Species 307/100
- Phylogenetic origin
- ID ORTHO05D008382
- #Genes/#Species 120/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Nitab4.5_0004869g0010.1
- SR1-identifier Nta01g32600.1
Descriptions
- Description DNA topoisomerase, type IA, core domain, DNA topoisomerase, type IA, central, Toprim domain, DNA topoisomerase, type IA, DNA-binding, DNA topoisomerase, type IA, DNA topoisomerase, type IA, central region, subdomain 1, DNA topoisomerase, type IA, domain 2, DNA topoisomerase, type IA, active site, DNA topoisomerase, type IA, central region, subdomain 2
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006265 | IEA | InterPro | DNA topological change |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003916 | IEA | InterPro | DNA topoisomerase activity | |
| GO:0003917 | IEA | InterPro | DNA topoisomerase type I (single strand cut, ATP-independent) activity | |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT2G32000 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR013497 | DNA topoisomerase, type IA, central |
| IPR003602 | DNA topoisomerase, type IA, DNA-binding domain |
| IPR023405 | DNA topoisomerase, type IA, core domain |
| IPR013826 | DNA topoisomerase, type IA, central region, subdomain 3 |
| IPR000380 | DNA topoisomerase, type IA |
| IPR034144 | DNA topoisomerase 3-like, TOPRIM domain |
| IPR013825 | DNA topoisomerase, type IA, central region, subdomain 2 |
| IPR013824 | DNA topoisomerase, type IA, central region, subdomain 1 |
| IPR006171 | TOPRIM domain |
| IPR003601 | DNA topoisomerase, type IA, domain 2 |
| Mapman id | Description |
|---|---|
| 12.3.4.3.2 | Chromatin organisation.post-translational histone modification.histone arginine methylation.TDRD3-TOP3B methyl-arginine reader complex.topoisomerase component TOP3b |
| 15.3.6.2.3 | RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.R-loop removal.type-1A topoisomerase (TOP3b) |