Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 0.0e+00 1332.8 668 100.0
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 1.0e-309 1066.2 698 78.1
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.2e-302 1042.7 692 76.9
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 5.7e-297 1023.8 699 75.7
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 3.5e-294 1014.6 694 74.1
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 2.9e-293 1011.5 694 74.5
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 1.0e-290 1003.0 695 71.9
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 1.8e-290 1002.3 693 73.3
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 4.0e-290 1001.1 693 73.3
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 3.1e-287 991.5 696 74.6
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 9.2e-287 989.9 693 71.4
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 2.7e-286 988.4 692 72.8
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 1.7e-285 985.7 679 72.8
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 5.0e-285 984.2 696 72.4
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 1.5e-284 982.6 688 72.8
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 1.6e-283 979.2 692 71.7
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 1.6e-283 979.2 676 72.9
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 2.1e-283 978.8 692 71.1
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 2.3e-282 975.3 693 71.7
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 3.0e-282 974.9 695 71.4
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 3.0e-282 974.9 693 71.0
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 8.9e-282 973.4 752 66.9
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 1.2e-281 973.0 692 70.4
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 1.5e-281 972.6 688 71.5
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 7.5e-281 970.3 704 70.5
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 1.7e-280 969.1 686 71.9
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 2.4e-279 965.3 688 70.9
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 4.6e-278 961.1 695 70.4
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 6.0e-278 960.7 691 71.2
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 3.0e-277 958.4 717 69.0
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 6.6e-277 957.2 694 70.3
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 3.3e-276 954.9 692 70.1
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 7.3e-276 953.7 692 69.7
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 9.5e-276 953.4 696 69.7
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 1.6e-275 952.6 678 71.1
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 2.1e-275 952.2 696 69.1
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 2.1e-275 952.2 692 70.5
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 6.2e-275 950.7 694 69.6
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 8.0e-275 950.3 685 70.5
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 1.1e-274 949.9 694 70.2
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 1.4e-274 949.5 689 70.4
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 5.2e-274 947.6 686 71.0
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 2.6e-273 945.3 690 69.9
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 4.4e-273 944.5 695 69.2
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 4.1e-271 937.9 694 67.9
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 2.7e-270 935.3 696 68.2
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 6.6e-269 930.6 697 68.1
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 1.5e-268 929.5 697 67.9
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 9.5e-268 926.8 696 67.2
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 9.5e-268 926.8 689 69.2
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.2e-267 926.4 692 68.9
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 1.2e-267 926.4 692 68.9
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 2.8e-267 925.2 692 68.8
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 3.6e-267 924.9 688 68.5
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 4.7e-267 924.5 692 68.6
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 4.7e-267 924.5 697 67.7
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 8.1e-267 923.7 694 66.4
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.3e-266 922.2 692 68.4
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 3.1e-266 921.8 694 66.4
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 6.8e-266 920.6 694 66.3
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.2e-265 919.8 694 66.1
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.2e-265 919.8 694 66.1
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 4.4e-265 917.9 690 68.6
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 4.4e-265 917.9 675 68.0
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 5.8e-265 917.5 704 67.8
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 7.5e-265 917.1 694 66.1
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 2.2e-264 915.6 696 67.1
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 8.3e-264 913.7 716 65.2
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 2.7e-262 908.7 661 69.1
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 7.8e-262 907.1 689 67.2
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 2.3e-261 905.6 725 64.4
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 5.1e-261 904.4 694 66.9
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 4.3e-260 901.4 690 66.1
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 2.1e-259 899.0 690 66.1
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 2.4e-258 895.6 690 66.1
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 1.2e-246 856.7 720 62.8
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.1e-246 855.9 681 64.3
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 4.8e-243 844.7 584 72.6
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 5.3e-242 841.3 659 65.6
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 3.4e-241 838.6 722 62.2
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 5.6e-236 821.2 684 62.6
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 3.1e-234 815.5 652 64.4
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 2.9e-232 808.9 709 59.9
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 4.9e-232 808.1 684 59.1
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 4.9e-232 808.1 675 59.3
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 9.3e-231 803.9 683 59.0
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 7.9e-230 800.8 687 58.8
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 1.0e-229 800.4 688 58.3
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 8.7e-229 797.3 683 58.3
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 2.5e-228 795.8 683 58.6
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 3.3e-228 795.4 683 58.6
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 2.4e-226 789.3 689 58.1
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 1.0e-224 783.9 670 58.5
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 1.0e-224 783.9 605 66.4
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 1.2e-222 776.9 663 58.5
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 2.2e-216 756.1 671 59.3
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 4.6e-214 748.4 689 58.5
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 2.1e-206 723.0 551 66.4
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 3.9e-205 718.8 450 80.2
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 1.6e-193 680.2 703 54.8
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 1.0e-192 677.6 484 70.2
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 1.3e-192 677.2 558 62.7
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 3.8e-192 675.6 659 57.4
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 8.0e-190 667.9 716 51.3
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 2.8e-187 659.4 666 52.6
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 3.8e-184 649.0 470 69.4
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.1e-182 643.3 684 54.4
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 5.4e-178 628.6 706 48.7
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 2.0e-177 626.7 680 53.4
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 8.9e-173 611.3 648 51.9
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 4.9e-171 605.5 464 65.1
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 2.1e-166 590.1 578 54.3
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 8.0e-166 588.2 688 46.4
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 1.5e-159 567.4 522 58.4
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 7.5e-156 555.1 638 46.4
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 1.5e-148 530.8 387 68.2
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 5.6e-143 512.3 690 41.0
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 1.2e-108 398.3 296 68.2
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 3.4e-108 396.7 635 36.7
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 4.4e-87 326.6 228 70.2
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.0e-79 301.2 268 62.3
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 2.0e-76 291.2 190 72.1
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 2.7e-60 237.7 334 43.4
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 2.7e-60 237.7 212 61.3
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 2.6e-55 221.1 144 70.1
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 2.0e-52 211.5 221 48.4
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 3.4e-47 194.1 164 61.6
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 1.7e-43 181.8 192 53.6
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 6.6e-43 179.9 202 54.0
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 8.1e-41 172.9 127 71.7
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 6.8e-40 169.9 166 56.6
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 1.4e-37 162.2 116 69.8
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 2.4e-37 161.4 105 76.2
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 9.2e-37 159.5 257 39.7
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 2.3e-35 154.8 531 26.9
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 1.2e-33 149.1 92 79.3
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 2.0e-31 141.7 96 70.8
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 1.7e-30 138.7 201 42.3
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 4.1e-29 134.0 97 67.0
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 1.6e-28 132.1 97 64.9
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.1e-24 119.4 82 70.7
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.8e-24 118.6 95 63.2
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 1.2e-23 115.9 76 68.4
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 3.2e-21 107.8 72 75.0
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.5e-18 99.0 66 69.7
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 4.3e-18 97.4 132 45.5
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 2.4e-16 91.7 191 35.6
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 6.9e-16 90.1 66 66.7
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 2.0e-15 88.6 55 74.5
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 2.6e-15 88.2 168 36.9
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 7.6e-15 86.7 259 29.7
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 4.9e-14 84.0 186 35.5
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 1.0e-11 76.3 81 51.9
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 1.7e-11 75.5 48 75.0
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 3.0e-11 74.7 81 50.6
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 3.9e-11 74.3 62 64.5
Oeu032522.1 Olea europaea HOM05D004484 ORTHO05D005370 2.8e-09 68.2 59 59.3
unitig_749.g13781 Utricularia gibba HOM05D004484 ORTHO05D005370 1.5e-07 62.4 43 67.4
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 3.4e-07 61.2 183 27.3
Hma1.2p1_1470F.1_g285600 Hydrangea macrophylla HOM05D000467 ORTHO05D011800 4.5e-07 60.8 53 67.9


User provided reference genes

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