Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013619 Camellia sinensis var. sinensis HOM05D004358 ORTHO05D004960 1.5e-206 722.6 362 100.0
Dinv22724 Davidia involucrata HOM05D004358 ORTHO05D004960 8.6e-122 441.0 369 64.2
Actinidia39855 Actinidia chinensis HOM05D004358 ORTHO05D004960 2.3e-119 433.0 397 63.0
vmacro15647 Vaccinium macrocarpon HOM05D004358 ORTHO05D004960 7.3e-113 411.4 441 55.3
Rhsim02G0076600 Rhododendron simsii HOM05D004358 ORTHO05D004960 3.7e-109 399.1 537 46.9
Potri.007G127600 Populus trichocarpa HOM05D004358 ORTHO05D004960 2.4e-108 396.4 365 58.1
MD04G1007400 Malus domestica HOM05D004358 ORTHO05D004960 4.1e-108 395.6 377 57.3
Cfa015153 Carpinus fangiana HOM05D004358 ORTHO05D004960 9.2e-108 394.4 373 57.4
GSVIVG01010748001 Vitis vinifera HOM05D004358 ORTHO05D004960 2.7e-107 392.9 375 58.1
CiPaw.02G055200 Carya illinoinensis HOM05D004358 ORTHO05D004960 3.5e-107 392.5 369 58.3
Nitab4.5_0005570g0020 Nicotiana tabacum HOM05D004358 ORTHO05D004960 6.0e-107 391.7 374 58.3
Sabra07G0103600 Salix brachista HOM05D004358 ORTHO05D004960 1.0e-106 391.0 368 56.8
Ciclev10020813m.g Citrus clementina HOM05D004358 ORTHO05D004960 1.3e-106 390.6 362 58.8
Duzib151G0384 Durio zibethinus HOM05D004358 ORTHO05D004960 1.5e-105 387.1 382 57.9
Prupe.1G191600 Prunus persica HOM05D004358 ORTHO05D004960 7.3e-105 384.8 385 56.6
TAR362G1164 Trochodendron aralioides HOM05D004358 ORTHO05D004960 9.5e-105 384.4 377 56.5
COL.COLO4_02723 Corchorus olitorius HOM05D004358 ORTHO05D004960 2.1e-104 383.3 373 56.6
TWI59G0142 Tripterygium wilfordii HOM05D004358 ORTHO05D004960 4.7e-104 382.1 361 57.6
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 6.8e-103 378.3 373 54.7
Sopen06g029780 Solanum pennellii HOM05D004358 ORTHO05D004960 6.8e-103 378.3 356 57.9
CAN.G65.181 Capsicum annuum HOM05D004358 ORTHO05D004960 2.0e-102 376.7 350 59.4
THA.LOC104827388 Tarenaya hassleriana HOM05D004358 ORTHO05D004960 3.4e-102 375.9 308 63.3
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 7.6e-102 374.8 344 57.6
Solyc06g073400.3 Solanum lycopersicum HOM05D004358 ORTHO05D004960 7.6e-102 374.8 358 57.0
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 1.3e-101 374.0 358 56.1
CANSAT78G2120 Cannabis sativa HOM05D004358 ORTHO05D004960 1.3e-101 374.0 330 60.3
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 1.7e-101 373.6 370 57.0
Peaxi162Scf00375g00513 Petunia axillaris HOM05D004358 ORTHO05D004960 6.4e-101 371.7 376 56.6
Lalb_Chr01g0003211 Lupinus albus HOM05D004358 ORTHO05D004960 8.4e-101 371.3 359 55.4
CARHR125100 Cardamine hirsuta HOM05D004358 ORTHO05D004960 1.4e-100 370.5 370 53.8
AT2G31450 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 4.1e-100 369.0 357 56.3
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 1.2e-99 367.5 299 64.5
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 1.2e-99 367.5 341 59.2
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 1.6e-99 367.1 357 56.6
MSTRG.6615 Avicennia marina HOM05D004358 ORTHO05D004960 2.1e-99 366.7 358 55.6
Glyma.11G128600 Glycine max HOM05D004358 ORTHO05D004960 2.7e-99 366.3 303 63.7
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 3.5e-99 365.9 344 56.7
AT1G05900 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 4.6e-99 365.5 390 52.8
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 4.6e-99 365.5 341 58.9
TAR636G1513 Trochodendron aralioides HOM05D004358 ORTHO05D004960 6.0e-99 365.2 252 71.8
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 1.0e-98 364.4 356 55.9
PSO675G5046 Papaver somniferum HOM05D004358 ORTHO05D004960 1.7e-98 363.6 363 56.2
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 2.3e-98 363.2 344 55.8
Cc00_g17220 Coffea canephora HOM05D004358 ORTHO05D004960 3.0e-98 362.8 397 52.6
AL1G15860 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 3.9e-98 362.5 385 52.7
BolC8t52682H Brassica oleracea HOM05D004358 ORTHO05D004960 3.9e-98 362.5 335 58.8
arahy.Tifrunner.gnm1.ann1.CJKM5C Arachis hypogaea HOM05D004358 ORTHO05D004960 5.1e-98 362.1 371 54.7
Carub.0004s1278 Capsella rubella HOM05D004358 ORTHO05D004960 5.1e-98 362.1 356 55.6
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 6.6e-98 361.7 362 55.2
Sc13g0005360 Simmondsia chinensis HOM05D004358 ORTHO05D004960 6.6e-98 361.7 368 55.2
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 1.5e-97 360.5 355 54.1
PSO732G0278 Papaver somniferum HOM05D004358 ORTHO05D004960 1.5e-97 360.5 367 55.9
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 1.9e-97 360.1 360 54.2
unitig_8.g4603 Utricularia gibba HOM05D004358 ORTHO05D004960 1.9e-97 360.1 250 69.6
Atru.chr3.1531 Acer truncatum HOM05D004358 ORTHO05D004960 2.5e-97 359.8 244 72.1
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 2.5e-97 359.8 348 56.0
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 2.5e-97 359.8 361 54.0
TPR.G34203 Trifolium pratense HOM05D004358 ORTHO05D004960 2.5e-97 359.8 302 61.3
Phvul.011G055100 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 4.3e-97 359.0 314 59.2
Carub.0001s0527 Capsella rubella HOM05D004358 ORTHO05D004960 5.6e-97 358.6 373 53.4
FAN07G2248 Fragaria x ananassa HOM05D004358 ORTHO05D004960 5.6e-97 358.6 372 55.1
PGR142G0453 Punica granatum HOM05D004358 ORTHO05D004960 7.3e-97 358.2 387 52.2
Gorai.011G146700 Gossypium raimondii HOM05D004358 ORTHO05D004960 1.2e-96 357.5 378 54.8
Ca_20780_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 1.6e-96 357.1 312 59.0
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 6.2e-96 355.1 312 59.6
VMungo1127G0908 Vigna mungo HOM05D004358 ORTHO05D004960 6.2e-96 355.1 302 60.3
C08p51540 Brassica napus HOM05D004358 ORTHO05D004960 8.1e-96 354.8 367 53.7
SalBow7G0323 Salvia bowleyana HOM05D004358 ORTHO05D004960 1.4e-95 354.0 322 56.2
A09p67250 Brassica napus HOM05D004358 ORTHO05D004960 6.9e-95 351.7 339 55.5
Lj3g0009399 Lotus japonicus HOM05D004358 ORTHO05D004960 1.2e-94 350.9 381 52.5
BraA09t42058Z Brassica rapa HOM05D004358 ORTHO05D005739 4.4e-94 349.0 305 58.4
PSO732G0822 Papaver somniferum HOM05D004358 ORTHO05D004960 5.8e-94 348.6 383 52.0
Thhalv10007955m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 9.9e-94 347.8 374 51.6
CsaV3_4G003300 Cucumis sativus L. HOM05D004358 ORTHO05D004960 1.7e-93 347.1 367 53.4
AUR62015399 Chenopodium quinoa HOM05D004358 ORTHO05D004960 2.2e-93 346.7 237 69.2
Atru.chr3.1534 Acer truncatum HOM05D004358 ORTHO05D004960 1.1e-92 344.4 251 68.5
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 1.4e-92 344.0 376 51.6
SGA_v2.0_scaffold181G39728 Striga asiatica HOM05D004358 ORTHO05D004960 1.4e-92 344.0 370 54.3
Hund03152 Selenicereus undatus HOM05D004358 ORTHO05D004960 1.9e-92 343.6 370 54.1
MELO3C017721.2 Cucumis melo HOM05D004358 ORTHO05D004960 4.2e-92 342.4 371 52.8
Ciclev10020816m.g Citrus clementina HOM05D004358 ORTHO05D004960 9.3e-92 341.3 347 53.9
BcaC07g42102 Brassica carinata HOM05D004358 ORTHO05D004960 1.7e-90 337.0 352 50.9
ATR0686G198 Amborella trichopoda HOM05D004358 ORTHO05D004960 3.9e-90 335.9 327 54.4
AUR62002292 Chenopodium quinoa HOM05D004358 ORTHO05D004960 5.1e-90 335.5 273 60.4
Thecc.04G185400 Theobroma cacao HOM05D004358 ORTHO05D004960 1.1e-89 334.3 383 51.2
EL10Ac3g05922 Beta vulgaris HOM05D004358 ORTHO05D004960 5.6e-89 332.0 371 51.5
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 1.6e-88 330.5 365 51.2
Ah.13g072910 Amaranthus hybridus HOM05D004358 ORTHO05D004960 1.1e-87 327.8 375 48.0
Gohir.D10G133000 Gossypium hirsutum HOM05D004358 ORTHO05D004960 6.9e-87 325.1 371 51.5
Lsat_1_v5_gn_8_80540 Lactuca sativa HOM05D004358 ORTHO05D004960 6.9e-87 325.1 291 57.7
Haze_01520 Corylus avellana HOM05D004358 ORTHO05D004960 3.4e-86 322.8 178 85.4
QL10p048514 Quercus lobata HOM05D004358 ORTHO05D004960 3.8e-85 319.3 178 84.8
arahy.Tifrunner.gnm1.ann1.VZ0ARL Arachis hypogaea HOM05D004358 ORTHO05D004960 1.1e-84 317.8 248 63.7
PGSC0003DMG401006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 7.1e-84 315.1 253 60.5
Peaxi162Scf00058g01717 Petunia axillaris HOM05D004358 ORTHO05D004960 9.3e-84 314.7 236 63.6
ECA236G3148 Erigeron canadensis HOM05D004358 ORTHO05D004960 6.0e-83 312.0 353 48.7
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 6.0e-83 312.0 251 60.2
Glyma.13G343700 Glycine max HOM05D004358 ORTHO05D004960 7.9e-83 311.6 248 63.3
Lj3g0017360 Lotus japonicus HOM05D004358 ORTHO05D004960 5.1e-82 308.9 240 63.3
Nn1g09578 Nelumbo nucifera HOM05D004358 ORTHO05D004960 5.1e-82 308.9 182 80.2
Sopen09g031880 Solanum pennellii HOM05D004358 ORTHO05D004960 8.7e-82 308.1 320 50.0
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 2.5e-81 306.6 246 61.8
Medtr2g098660 Medicago truncatula HOM05D004358 ORTHO05D004960 7.4e-81 305.1 248 63.3
CAN.G749.19 Capsicum annuum HOM05D004358 ORTHO05D004960 9.6e-81 304.7 254 58.7
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 1.3e-80 304.3 358 51.1
ECA236G1172 Erigeron canadensis HOM05D004358 ORTHO05D004960 2.1e-80 303.5 321 52.3
SHI24906 Sapria himalayana HOM05D004358 ORTHO05D004960 2.8e-80 303.1 252 60.7
arahy.Tifrunner.gnm1.ann1.Z962T9 Arachis hypogaea HOM05D004358 ORTHO05D004960 3.1e-79 299.7 362 48.9
Nitab4.5_0000941g0030 Nicotiana tabacum HOM05D004358 ORTHO05D004960 6.9e-79 298.5 251 59.0
Zm00001eb406830 Zea mays HOM05D004358 ORTHO05D004960 6.9e-79 298.5 343 48.7
ClCG07G015600 Citrullus lanatus HOM05D004358 ORTHO05D004960 1.2e-78 297.7 197 74.1
Nitab4.5_0003132g0140 Nicotiana tabacum HOM05D004358 ORTHO05D004960 1.2e-78 297.7 382 49.0
CARHR005460 Cardamine hirsuta HOM05D004358 ORTHO05D004960 3.4e-78 296.2 182 76.4
Eucgr.H00376 Eucalyptus grandis HOM05D004358 ORTHO05D004960 3.4e-78 296.2 168 82.7
Ca_01263_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 7.6e-78 295.0 246 61.8
Phvul.005G152500 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 4.9e-77 292.4 242 61.6
DCAR_028143 Daucus carota HOM05D004358 ORTHO05D004960 2.7e-75 286.6 188 72.9
arahy.Tifrunner.gnm1.ann1.98UW30 Arachis hypogaea HOM05D004358 ORTHO05D004960 4.6e-75 285.8 229 62.0
SMO347G0587 Selaginella moellendorffii HOM05D004358 ORTHO05D004960 3.9e-74 282.7 240 59.2
Solyc09g083003.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 2.1e-72 276.9 177 71.2
Mapoly0058s0068 Marchantia polymorpha HOM05D004358 ORTHO05D004960 6.2e-72 275.4 241 57.3
Aqoxy7G00191 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 2.2e-69 266.9 359 45.1
CBR_g29622 Chara braunii HOM05D004358 ORTHO05D004960 1.9e-68 263.8 250 54.0
Mapoly0058s0067 Marchantia polymorpha HOM05D004358 ORTHO05D004960 5.5e-68 262.3 262 52.7
Migut.M00111 Erythranthe guttata HOM05D004358 ORTHO05D004960 5.1e-66 255.8 228 58.3
Sp1g04740 Schrenkiella parvula HOM05D004358 ORTHO05D004960 2.5e-65 253.4 360 43.9
SalBow7G1435 Salvia bowleyana HOM05D004358 ORTHO05D004960 3.3e-65 253.1 137 83.2
Psat1g007160 Pisum sativum HOM05D004358 ORTHO05D004960 5.9e-62 242.3 202 61.4
PGSC0003DMG401026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 5.1e-50 202.6 106 87.7
Ca_18838_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 3.1e-47 193.4 114 77.2
Gohir.A10G133700 Gossypium hirsutum HOM05D004358 ORTHO05D004960 9.1e-47 191.8 268 46.6
Haze_27447 Corylus avellana HOM05D004358 ORTHO05D004960 2.6e-46 190.3 232 42.7
CAN.G80.26 Capsicum annuum HOM05D004358 ORTHO05D004960 1.6e-43 181.0 224 43.3
Glyma.12G053100 Glycine max HOM05D004358 ORTHO05D004960 3.0e-42 176.8 109 75.2
Pp3c17_17810 Physcomitrium patens HOM05D004358 ORTHO05D004960 9.1e-39 165.2 242 38.0
Cfa026201 Carpinus fangiana HOM05D004358 ORTHO05D004960 1.6e-38 164.5 245 38.8
AagrBONN_evm.TU.Sc2ySwM_368.679 Anthoceros agrestis HOM05D004358 ORTHO05D004960 2.0e-33 147.5 181 48.6
DCAR_028139 Daucus carota HOM05D004358 ORTHO05D004960 8.2e-32 142.1 75 82.7
Mapoly0058s0064 Marchantia polymorpha HOM05D004358 ORTHO05D004960 5.0e-29 132.9 100 62.0
Cpa.g.sc41.25 Carica papaya HOM05D004358 ORTHO05D004960 1.2e-25 121.7 74 78.4
BcaC07g42101 Brassica carinata HOM05D004358 ORTHO05D004960 1.7e-24 117.9 74 73.0
Cpa.g.sc41.31 Carica papaya HOM05D004358 ORTHO05D004960 3.7e-24 116.7 73 76.7
Rhsim02G0076400 Rhododendron simsii HOM05D004358 ORTHO05D004960 2.5e-20 104.0 92 55.4
Lj3A203T17 Lonicera japonica HOM05D004358 ORTHO05D004960 2.3e-18 97.4 119 47.1
PGSC0003DMG402026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 2.4e-15 87.4 176 36.4
Oeu007466.1 Olea europaea HOM05D004358 ORTHO05D004960 7.0e-15 85.9 154 37.7
Haze_01519 Corylus avellana HOM05D004358 ORTHO05D004960 9.2e-15 85.5 230 32.2
SalBow1G3505 Salvia bowleyana HOM05D004358 ORTHO05D004960 9.2e-15 85.5 124 39.5
BcaC01g05951 Brassica carinata HOM05D004358 ORTHO05D004960 1.3e-13 81.6 136 39.7
PGSC0003DMG402006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 1.7e-13 81.3 59 59.3
Cre17.g732050 Chlamydomonas reinhardtii HOM05D004358 ORTHO05D004960 2.3e-13 80.9 157 31.2
QL10p048520 Quercus lobata HOM05D004358 ORTHO05D004960 1.1e-12 78.6 59 66.1
Ca_29315_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 1.5e-12 78.2 152 31.6
Lj3C203G5 Lonicera japonica HOM05D009066 ORTHO05D004960 8.0e-11 72.4 37 86.5
Gohir.D08G144100 Gossypium hirsutum HOM05D004358 ORTHO05D004960 5.2e-10 69.7 36 88.9
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 4.4e-09 66.6 155 30.3
PRCOL_00001550 Prasinoderma coloniale HOM05D004358 ORTHO05D004960 3.7e-08 63.5 133 29.3
Cre02.g082000 Chlamydomonas reinhardtii HOM05D006570 ORTHO05D008193 1.1e-07 62.0 152 28.3
Ciclev10015195m.g Citrus clementina HOM05D006570 ORTHO05D008193 1.1e-07 62.0 156 30.8
Thecc.04G185600 Theobroma cacao HOM05D004358 ORTHO05D004960 1.4e-07 61.6 33 84.8
Phvul.010G109900 Phaseolus vulgaris HOM05D006570 ORTHO05D008193 4.1e-07 60.1 139 29.5
Actinidia23139 Actinidia chinensis HOM05D006570 ORTHO05D008193 5.4e-07 59.7 139 30.2
CsaV3_6G007600 Cucumis sativus L. HOM05D006570 ORTHO05D008193 7.0e-07 59.3 139 30.2
Glyma.15G030650 Glycine max HOM05D004358 ORTHO05D004960 7.0e-07 59.3 100 38.0
PGR083G1749 Punica granatum HOM05D006570 ORTHO05D008193 9.2e-07 58.9 139 30.2
arahy.Tifrunner.gnm1.ann1.N5JW36 Arachis hypogaea HOM05D006570 ORTHO05D008193 1.2e-06 58.5 150 30.0
arahy.Tifrunner.gnm1.ann1.L2UBUE Arachis hypogaea HOM05D006570 ORTHO05D008193 1.6e-06 58.2 150 29.3
CiPaw.07G077200 Carya illinoinensis HOM05D006570 ORTHO05D008193 1.6e-06 58.2 160 29.4
Glyma.07G059700 Glycine max HOM05D006570 ORTHO05D008193 1.6e-06 58.2 139 28.8
Mapoly0043s0062 Marchantia polymorpha HOM05D006570 ORTHO05D008193 2.0e-06 57.8 162 30.2
Thecc.01G203700 Theobroma cacao HOM05D006570 ORTHO05D008193 2.7e-06 57.4 144 30.6
Ca_23570_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 3.5e-06 57.0 139 29.5
Ca_23579_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 3.5e-06 57.0 139 29.5
Gohir.A07G088500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 3.5e-06 57.0 109 34.9
Lalb_Chr10g0100201 Lupinus albus HOM05D006570 ORTHO05D008193 3.5e-06 57.0 132 32.6
VMungo0331G0798 Vigna mungo HOM05D006570 ORTHO05D008193 3.5e-06 57.0 155 29.0
Gohir.D07G093500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 4.6e-06 56.6 144 31.2
Gorai.001G100200 Gossypium raimondii HOM05D006570 ORTHO05D008193 4.6e-06 56.6 144 31.2
Manes.13G058200 Manihot esculenta HOM05D006570 ORTHO05D008193 4.6e-06 56.6 139 30.9
Psat4g158840 Pisum sativum HOM05D006570 ORTHO05D008193 4.6e-06 56.6 139 29.5
FAN21G3910 Fragaria x ananassa HOM05D006570 ORTHO05D008193 6.0e-06 56.2 140 30.0
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 6.0e-06 56.2 163 28.2
Actinidia11648 Actinidia chinensis HOM05D006570 ORTHO05D008193 7.8e-06 55.8 152 27.6
MCO12G048 Micromonas commoda HOM05D006570 ORTHO05D008193 7.8e-06 55.8 166 28.9
vmacro02851 Vaccinium macrocarpon HOM05D006570 ORTHO05D008193 7.8e-06 55.8 150 29.3


User provided reference genes

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