Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0291 Ceratophyllum demersum HOM05D003203 ORTHO05D003526 0.0e+00 1301.6 643 100.0
Dinv32789 Davidia involucrata HOM05D003203 ORTHO05D003526 8.7e-226 787.3 593 66.3
TAR636G0568 Trochodendron aralioides HOM05D003203 ORTHO05D003526 4.3e-225 785.0 602 67.3
RcHm_v2.0_Chr5g0060751 Rosa chinensis HOM05D003203 ORTHO05D003526 5.6e-225 784.6 609 66.2
TAR633G1300 Trochodendron aralioides HOM05D003203 ORTHO05D003526 6.9e-223 777.7 597 67.2
Nn2g10680 Nelumbo nucifera HOM05D003203 ORTHO05D003526 1.3e-221 773.5 620 63.4
Thecc.09G260300 Theobroma cacao HOM05D003203 ORTHO05D003526 2.9e-221 772.3 589 66.7
COL.COLO4_25248 Corchorus olitorius HOM05D003203 ORTHO05D003526 3.8e-221 771.9 544 70.8
Prupe.6G094700 Prunus persica HOM05D003203 ORTHO05D003526 2.4e-220 769.2 570 67.7
CANSAT54G1869 Cannabis sativa HOM05D003203 ORTHO05D003526 3.2e-220 768.8 623 63.4
ATR1159G092 Amborella trichopoda HOM05D003203 ORTHO05D003526 5.4e-220 768.1 581 66.6
FvH4_3g33360 Fragaria vesca HOM05D003203 ORTHO05D003526 1.6e-219 766.5 627 63.8
FAN16G3448 Fragaria x ananassa HOM05D003203 ORTHO05D003526 3.5e-219 765.4 610 64.4
Manes.11G141000 Manihot esculenta HOM05D003203 ORTHO05D003526 6.0e-219 764.6 605 64.1
GSVIVG01025133001 Vitis vinifera HOM05D003203 ORTHO05D003526 6.0e-219 764.6 502 75.1
CiPaw.13G106900 Carya illinoinensis HOM05D003203 ORTHO05D003526 7.9e-219 764.2 596 64.3
Aqoxy4G03208 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 1.3e-218 763.5 579 66.1
FAN11G3892 Fragaria x ananassa HOM05D003203 ORTHO05D003526 2.3e-218 762.7 628 63.5
CSS0047004 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 3.9e-218 761.9 545 69.9
Lj3g0020808 Lotus japonicus HOM05D003203 ORTHO05D003526 3.9e-218 761.9 562 68.0
QL01p037166 Quercus lobata HOM05D003203 ORTHO05D003526 3.9e-218 761.9 603 65.0
Cpa.g.sc139.65 Carica papaya HOM05D003203 ORTHO05D003526 6.7e-218 761.1 601 63.7
Glyma.11G152960 Glycine max HOM05D003203 ORTHO05D003526 1.5e-217 760.0 561 67.9
Lj3g0012673 Lotus japonicus HOM05D003203 ORTHO05D003526 1.5e-217 760.0 577 66.9
Sed0015984 Sechium edule HOM05D003203 ORTHO05D003526 3.3e-217 758.8 619 63.2
Sc15g0001570 Simmondsia chinensis HOM05D003203 ORTHO05D003526 3.3e-217 758.8 626 63.7
HPP92_010183 Vanilla planifolia HOM05D003203 ORTHO05D003526 5.6e-217 758.1 618 62.8
MD11G1129800 Malus domestica HOM05D003203 ORTHO05D003526 1.6e-216 756.5 633 61.9
PGR102G2647 Punica granatum HOM05D003203 ORTHO05D003526 2.8e-216 755.7 626 62.8
VMungo1127G1096 Vigna mungo HOM05D003203 ORTHO05D003526 2.8e-216 755.7 557 67.7
Gorai.009G078900 Gossypium raimondii HOM05D003203 ORTHO05D003526 3.7e-216 755.4 581 67.1
AUR62006513 Chenopodium quinoa HOM05D003203 ORTHO05D003526 4.8e-216 755.0 623 63.1
Ciclev10027702m.g Citrus clementina HOM05D003203 ORTHO05D003526 4.8e-216 755.0 595 64.2
MSTRG.21144 Avicennia marina HOM05D003203 ORTHO05D003526 6.2e-216 754.6 543 69.6
arahy.Tifrunner.gnm1.ann1.DWB64P Arachis hypogaea HOM05D003203 ORTHO05D003526 1.1e-215 753.8 638 62.2
CsaV3_1G013020 Cucumis sativus L. HOM05D003203 ORTHO05D003526 1.4e-215 753.4 596 65.1
Solyc11g072430.3 Solanum lycopersicum HOM05D003203 ORTHO05D003526 1.4e-215 753.4 633 61.6
Eucgr.B02467 Eucalyptus grandis HOM05D003203 ORTHO05D003526 1.8e-215 753.1 554 68.1
Sopen11g030070 Solanum pennellii HOM05D003203 ORTHO05D003526 3.1e-215 752.3 633 61.5
arahy.Tifrunner.gnm1.ann1.GJ7521 Arachis hypogaea HOM05D003203 ORTHO05D003526 4.0e-215 751.9 559 67.8
Phvul.011G072500 Phaseolus vulgaris HOM05D003203 ORTHO05D003526 9.0e-215 750.7 557 67.7
MELO3C005030.2 Cucumis melo HOM05D003203 ORTHO05D003526 1.5e-214 750.0 619 63.0
Cfa011365 Carpinus fangiana HOM05D003203 ORTHO05D003526 4.5e-214 748.4 538 69.5
Cc01_g11550 Coffea canephora HOM05D003203 ORTHO05D003526 5.8e-214 748.0 595 63.9
Medtr4g060795 Medicago truncatula HOM05D003203 ORTHO05D003526 1.0e-213 747.3 614 61.7
Sabra16G0090500 Salix brachista HOM05D003203 ORTHO05D003526 2.2e-213 746.1 580 67.1
Lalb_Chr03g0027111 Lupinus albus HOM05D003203 ORTHO05D003526 8.4e-213 744.2 544 68.2
TWI31G0332 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 1.4e-212 743.4 632 61.2
Migut.D02182 Erythranthe guttata HOM05D003203 ORTHO05D003526 2.5e-212 742.7 598 63.9
ClCG03G002340 Citrullus lanatus HOM05D003203 ORTHO05D003526 5.5e-212 741.5 638 61.6
DCAR_006042 Daucus carota HOM05D003203 ORTHO05D003526 2.1e-211 739.6 593 63.4
THA.LOC104815752 Tarenaya hassleriana HOM05D003203 ORTHO05D003526 2.7e-211 739.2 551 67.3
Ca_19241_v3 Cicer arietinum L. HOM05D003203 ORTHO05D003526 3.5e-211 738.8 546 66.8
Psat7g223280 Pisum sativum HOM05D003203 ORTHO05D003526 3.9e-210 735.3 609 62.2
Zm00001eb302520 Zea mays HOM05D003203 ORTHO05D003526 3.9e-210 735.3 578 64.2
Lj1C185T11 Lonicera japonica HOM05D003203 ORTHO05D003526 1.1e-209 733.8 578 64.9
RcHm_v2.0_Chr4g0389641 Rosa chinensis HOM05D003203 ORTHO05D003526 1.1e-209 733.8 484 73.1
FvH4_4g02320 Fragaria vesca HOM05D003203 ORTHO05D003526 4.3e-209 731.9 482 73.2
Rhsim01G0220300 Rhododendron simsii HOM05D003203 ORTHO05D003526 5.7e-209 731.5 659 58.3
TPR.G14912 Trifolium pratense HOM05D003203 ORTHO05D003526 5.7e-209 731.5 542 67.3
CAN.G352.40 Capsicum annuum HOM05D003203 ORTHO05D003526 1.3e-208 730.3 597 62.0
Thhalv10006605m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 4.8e-208 728.4 587 63.2
HanXRQChr13g0401461 Helianthus annuus HOM05D003203 ORTHO05D003526 6.2e-208 728.0 571 64.6
AT1G07910 Arabidopsis thaliana HOM05D003203 ORTHO05D003526 2.4e-207 726.1 595 61.7
BcaC07g41968 Brassica carinata HOM05D003203 ORTHO05D003526 3.1e-207 725.7 570 64.6
C08p50260 Brassica napus HOM05D003203 ORTHO05D003526 3.1e-207 725.7 570 64.6
BolC8t52555H Brassica oleracea HOM05D003203 ORTHO05D003526 3.1e-207 725.7 570 64.6
AUR62025015 Chenopodium quinoa HOM05D003203 ORTHO05D003526 3.1e-207 725.7 680 56.9
Gohir.D05G077500 Gossypium hirsutum HOM05D003203 ORTHO05D003526 3.1e-207 725.7 582 65.5
PSO339G5999 Papaver somniferum HOM05D003203 ORTHO05D003526 4.1e-207 725.3 542 65.7
SalBow3G4618 Salvia bowleyana HOM05D003203 ORTHO05D003526 4.1e-207 725.3 583 64.3
SHI27628 Sapria himalayana HOM05D003203 ORTHO05D003526 4.1e-207 725.3 569 66.1
FAN12G0401 Fragaria x ananassa HOM05D003203 ORTHO05D003526 5.3e-207 724.9 482 72.6
BcaC07g42504 Brassica carinata HOM05D003203 ORTHO05D003526 2.0e-206 723.0 484 72.7
Lsat_1_v5_gn_6_26241 Lactuca sativa HOM05D003203 ORTHO05D003526 2.6e-206 722.6 542 67.2
Oeu005910.3 Olea europaea HOM05D003203 ORTHO05D003526 2.6e-206 722.6 540 67.8
Lj1A185G36 Lonicera japonica HOM05D003203 ORTHO05D003526 3.4e-206 722.2 637 60.0
Migut.N02091 Erythranthe guttata HOM05D003203 ORTHO05D003526 1.3e-205 720.3 484 73.1
Aa31sc36G120 Aethionema arabicum HOM05D003203 ORTHO05D003526 1.7e-205 719.9 595 60.8
BraA09t41949Z Brassica rapa HOM05D003203 ORTHO05D003526 1.7e-205 719.9 484 73.1
A09p66110 Brassica napus HOM05D003203 ORTHO05D003526 3.8e-205 718.8 484 72.7
PSO765G0203 Papaver somniferum HOM05D003203 ORTHO05D003526 3.8e-205 718.8 543 65.6
Os07g0191700 Oryza sativa ssp. japonica HOM05D003203 ORTHO05D003526 1.9e-204 716.5 550 65.1
Carub.0001s0725 Capsella rubella HOM05D003203 ORTHO05D003526 5.5e-204 714.9 595 60.7
Carub.0011s0009 Capsella rubella HOM05D003203 ORTHO05D003526 4.6e-203 711.8 595 60.2
PSO063G5461 Papaver somniferum HOM05D003203 ORTHO05D003526 3.0e-202 709.1 575 62.6
AL6G53580 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 1.9e-201 706.4 511 68.1
Nitab4.5_0001802g0140 Nicotiana tabacum HOM05D003203 ORTHO05D003526 2.5e-201 706.1 594 60.4
EL10Ac9g22449 Beta vulgaris HOM05D003203 ORTHO05D003526 7.4e-201 704.5 507 68.0
Duzib168G0563 Durio zibethinus HOM05D003203 ORTHO05D003526 1.6e-200 703.4 547 66.5
BcaC05g24708 Brassica carinata HOM05D003203 ORTHO05D003526 1.8e-199 699.9 511 68.7
A06p05020 Brassica napus HOM05D003203 ORTHO05D003526 6.9e-199 698.0 511 68.3
BraA06t23708Z Brassica rapa HOM05D003203 ORTHO05D003526 6.9e-199 698.0 511 68.3
Gohir.A05G074700 Gossypium hirsutum HOM05D003203 ORTHO05D003526 1.0e-197 694.1 451 75.2
Nitab4.5_0002129g0110 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.3e-197 693.7 597 60.0
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 8.5e-197 691.0 510 68.2
SEGI_33151 Sequoiadendron giganteum HOM05D003203 ORTHO05D003526 8.5e-197 691.0 487 69.0
BcaB02g06702 Brassica carinata HOM05D003203 ORTHO05D003526 1.9e-196 689.9 515 67.2
unitig_736.g22420 Utricularia gibba HOM05D003203 ORTHO05D003526 1.9e-196 689.9 638 58.5
AL1G18200 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 2.5e-196 689.5 542 64.4
C05p05960 Brassica napus HOM05D003203 ORTHO05D003526 4.2e-196 688.7 510 68.0
ECA233G2891 Erigeron canadensis HOM05D003203 ORTHO05D003526 1.8e-194 683.3 634 57.6
SGA_v2.0_scaffold97G29171 Striga asiatica HOM05D003203 ORTHO05D003526 1.7e-192 676.8 579 61.5
SalBow6G0781 Salvia bowleyana HOM05D003203 ORTHO05D003526 7.4e-185 651.4 518 65.3
Lj2C1036G7 Lonicera japonica HOM05D003203 ORTHO05D003526 3.7e-184 649.0 609 58.1
Haze_23916 Corylus avellana HOM05D003203 ORTHO05D003526 2.6e-182 642.9 509 65.4
FAN22G0069 Fragaria x ananassa HOM05D003203 ORTHO05D003526 3.5e-174 615.9 483 64.4
Potri.016G083100 Populus trichocarpa HOM05D003203 ORTHO05D003526 8.5e-173 611.3 399 75.2
SpUn0400_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 1.7e-168 597.0 559 56.4
Atru.chr3.3693 Acer truncatum HOM05D003203 ORTHO05D003526 1.9e-164 583.6 453 64.5
Nn2g13009 Nelumbo nucifera HOM05D003203 ORTHO05D003526 4.7e-163 578.9 370 74.6
FAN17G1981 Fragaria x ananassa HOM05D003203 ORTHO05D003526 8.0e-163 578.2 482 61.4
Peaxi162Scf00389g00932 Petunia axillaris HOM05D003203 ORTHO05D003526 1.2e-158 564.3 379 71.0
Aqoxy3G02869 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 2.5e-156 556.6 376 70.5
vmacro14071 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 2.9e-152 543.1 410 65.6
Hund28195 Selenicereus undatus HOM05D003203 ORTHO05D003526 1.3e-149 534.3 410 64.6
Hund28197 Selenicereus undatus HOM05D003203 ORTHO05D003526 1.3e-149 534.3 410 64.6
Pp3c27_2850 Physcomitrium patens HOM05D003203 ORTHO05D003526 3.4e-145 519.6 485 54.8
AagrBONN_evm.TU.Sc2ySwM_244.3 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.2e-144 516.9 477 56.6
AagrBONN_evm.TU.Sc2ySwM_341.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 8.3e-144 515.0 477 57.0
Mapoly0005s0012 Marchantia polymorpha HOM05D003203 ORTHO05D003526 8.3e-144 515.0 495 54.1
AagrBONN_evm.TU.Sc2ySwM_117.4029 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.1e-143 514.6 477 56.6
AagrBONN_evm.TU.Sc2ySwM_341.2 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.2e-143 513.1 477 56.4
AagrBONN_evm.TU.Sc2ySwM_362.2654 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.0e-142 510.4 582 49.1
AagrBONN_evm.TU.Sc2ySwM_117.4033 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.7e-142 510.0 473 57.1
AagrBONN_evm.TU.Sc2ySwM_117.4034 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.3e-141 506.9 473 56.9
SMO223G0015 Selaginella moellendorffii HOM05D003203 ORTHO05D003526 7.3e-140 501.9 478 53.8
CBR_g39406 Chara braunii HOM05D003203 ORTHO05D003526 2.1e-131 473.8 489 51.9
arahy.Tifrunner.gnm1.ann1.VS5L85 Arachis hypogaea HOM05D003203 ORTHO05D003526 9.2e-127 458.4 564 48.8
MD03G1112400 Malus domestica HOM05D003203 ORTHO05D003526 3.5e-126 456.4 338 67.5
AagrBONN_evm.TU.Sc2ySwM_117.4032 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.9e-111 407.5 341 61.3
DCAR_024905 Daucus carota HOM05D003203 ORTHO05D003526 3.8e-88 330.1 268 61.2
AL7G46970 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 9.0e-82 308.9 246 61.8
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 5.0e-80 303.1 308 51.3
AagrBONN_evm.TU.Sc2ySwM_246.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.4e-77 295.0 349 47.9
CARHR007720 Cardamine hirsuta HOM05D003203 ORTHO05D003526 1.1e-71 275.4 224 62.1
Nitab4.5_0000848g0100 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.4e-66 258.5 322 47.2
AagrBONN_evm.TU.Sc2ySwM_245.2 Anthoceros agrestis HOM05D003203 ORTHO05D003526 7.2e-63 246.1 300 45.3
vmacro14465 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 8.2e-59 232.6 182 64.3
Nitab4.5_0004347g0030 Nicotiana tabacum HOM05D003203 ORTHO05D003526 8.5e-56 222.6 197 57.4
DCAR_024904 Daucus carota HOM05D003203 ORTHO05D003526 7.2e-55 219.5 153 72.5
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 9.4e-55 219.2 181 59.1
vmacro14466 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 7.5e-52 209.5 254 49.6
Ah.01g014960 Amaranthus hybridus HOM05D003203 ORTHO05D003526 7.0e-50 203.0 166 65.1
Lj3g0013082 Lotus japonicus HOM05D003203 ORTHO05D003526 2.9e-48 197.6 185 58.9
Gohir.A07G142600 Gossypium hirsutum HOM05D003203 ORTHO05D003526 5.0e-48 196.8 230 52.6
TPR.G38674 Trifolium pratense HOM05D003203 ORTHO05D003526 8.8e-45 186.0 117 71.8
RcHm_v2.0_Chr1g0326771 Rosa chinensis HOM05D003203 ORTHO05D003526 5.7e-44 183.3 134 63.4
Dinv24673 Davidia involucrata HOM05D003203 ORTHO05D003526 1.3e-40 172.2 138 66.7
Peaxi162Scf00389g00943 Petunia axillaris HOM05D003203 ORTHO05D003526 8.3e-35 152.9 184 47.3
vmacro14070 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 9.2e-34 149.4 201 47.3
Atru.chr3.3692 Acer truncatum HOM05D003203 ORTHO05D003526 4.6e-25 120.6 90 70.0
Gohir.A03G109301 Gossypium hirsutum HOM05D003203 ORTHO05D003526 2.3e-24 118.2 89 67.4
Gohir.A08G106700 Gossypium hirsutum HOM05D003203 ORTHO05D003526 4.3e-23 114.0 89 66.3
vmacro14464 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 1.5e-20 105.5 77 61.0
QL11p006401 Quercus lobata HOM05D003203 ORTHO05D003526 9.8e-20 102.8 84 56.0
QL11p006907 Quercus lobata HOM05D003203 ORTHO05D003526 9.8e-20 102.8 82 57.3
QL11p006896 Quercus lobata HOM05D003203 ORTHO05D003526 3.7e-19 100.9 81 56.8
Lsat_1_v5_gn_1_45160 Lactuca sativa HOM05D003203 ORTHO05D003526 1.9e-18 98.6 133 44.4
TPR.G38645 Trifolium pratense HOM05D003203 ORTHO05D003526 1.9e-18 98.6 78 55.1
AagrBONN_evm.TU.Sc2ySwM_342.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.2e-18 97.8 111 47.7
Cre07.g352800 Chlamydomonas reinhardtii HOM05D003203 ORTHO05D003526 1.2e-17 95.9 254 29.9
COL.COLO4_02731 Corchorus olitorius HOM05D003203 ORTHO05D003526 1.2e-17 95.9 50 82.0
Thhalv10023078m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 4.6e-17 94.0 141 39.0
RcHm_v2.0_Chr3g0490601 Rosa chinensis HOM05D003203 ORTHO05D003526 4.7e-14 84.0 85 51.8
Lsat_1_v5_gn_8_71460 Lactuca sativa HOM05D006073 ORTHO05D007354 2.3e-13 81.6 75 58.7
TPR.G2853 Trifolium pratense HOM05D003203 ORTHO05D003526 8.9e-13 79.7 52 76.9
TPR.G22000 Trifolium pratense HOM05D003203 ORTHO05D003526 3.4e-12 77.8 54 63.0
CSS0004531 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 2.2e-11 75.1 91 48.4
Zm00001eb134270 Zea mays HOM05D003203 ORTHO05D003526 3.8e-11 74.3 61 67.2
Aqoxy3G02870 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 4.1e-10 70.9 39 82.1
Lsat_1_v5_gn_9_33601 Lactuca sativa HOM05D003172 ORTHO05D003526 5.4e-10 70.5 104 39.4
Glyma.11G172800 Glycine max HOM05D003203 ORTHO05D003526 3.9e-08 64.3 152 31.6
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 8.6e-08 63.2 80 41.2
Nitab4.5_0010520g0030 Nicotiana tabacum HOM05D003203 ORTHO05D003526 5.6e-07 60.5 48 60.4
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 9.6e-07 59.7 64 43.8
MELO3C000359.2 Cucumis melo HOM05D003203 ORTHO05D003526 1.2e-06 59.3 92 41.3
Lsat_1_v5_gn_8_153961 Lactuca sativa HOM05D003203 ORTHO05D003526 1.6e-06 58.9 44 68.2
CAN.G553.12 Capsicum annuum HOM05D003203 ORTHO05D003526 3.6e-06 57.8 33 81.8
TPR.G33733 Trifolium pratense HOM05D003203 ORTHO05D003526 4.7e-06 57.4 32 75.0


User provided reference genes

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