Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 0.0e+00 1093.6 539 100.0
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 6.0e-196 688.0 705 51.8
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 1.3e-190 670.2 666 52.6
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 1.1e-189 667.2 675 51.4
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 1.4e-189 666.8 675 51.3
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 5.4e-189 664.8 675 51.9
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.7e-188 662.5 673 51.1
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 3.5e-188 662.1 674 51.5
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 3.5e-188 662.1 638 54.1
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 4.6e-188 661.8 675 51.7
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 3.0e-187 659.1 732 49.2
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 4.3e-186 655.2 675 51.0
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 7.4e-186 654.4 671 50.5
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 2.1e-185 652.9 675 51.1
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 4.8e-185 651.7 675 51.3
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 6.2e-185 651.4 655 52.4
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 2.0e-183 646.4 677 50.5
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 2.0e-183 646.4 672 51.0
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 2.6e-183 646.0 666 50.2
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 9.9e-183 644.0 675 49.8
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 1.7e-182 643.3 687 50.2
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 4.9e-182 641.7 671 49.9
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 1.1e-181 640.6 672 49.6
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 1.9e-181 639.8 675 50.1
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 4.2e-181 638.6 671 50.8
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 4.2e-181 638.6 655 50.7
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 5.5e-181 638.3 675 49.9
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 5.5e-181 638.3 675 50.4
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.2e-180 637.1 675 49.6
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 2.1e-180 636.3 671 50.2
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 3.5e-180 635.6 675 48.6
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 4.6e-180 635.2 671 50.2
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 4.6e-180 635.2 672 50.4
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 1.0e-179 634.0 671 50.7
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.3e-179 633.6 673 48.9
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.3e-179 633.6 673 48.9
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 1.3e-179 633.6 677 49.0
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 1.3e-179 633.6 671 50.8
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 1.8e-179 633.3 674 49.3
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.8e-179 633.3 673 48.9
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.8e-179 633.3 673 48.7
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 1.1e-178 630.6 673 49.6
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 4.3e-178 628.6 656 49.7
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 5.6e-178 628.2 675 48.0
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 1.3e-177 627.1 676 49.1
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 1.6e-177 626.7 671 48.7
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 2.1e-177 626.3 672 49.3
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 2.8e-177 625.9 675 49.2
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 3.7e-177 625.5 702 47.4
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 6.2e-177 624.8 671 49.0
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 6.9e-176 621.3 675 49.2
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 9.0e-176 620.9 675 49.8
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 1.2e-175 620.5 673 49.2
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 2.6e-175 619.4 671 48.3
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 5.8e-175 618.2 675 49.9
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 1.3e-174 617.1 462 65.6
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.3e-174 617.1 651 49.5
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 1.7e-174 616.7 675 49.5
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 3.8e-174 615.5 674 48.8
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 1.1e-173 614.0 676 48.4
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 1.4e-173 613.6 676 49.3
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.0e-171 607.4 670 47.0
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 1.0e-171 607.4 671 47.1
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 2.3e-171 606.3 676 48.7
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 2.3e-171 606.3 673 48.4
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 5.1e-171 605.1 703 46.1
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 1.1e-170 604.0 692 46.2
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 5.7e-170 601.7 670 49.0
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 9.7e-170 600.9 670 49.0
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 9.7e-170 600.9 670 49.0
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 9.7e-170 600.9 670 48.8
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 9.7e-170 600.9 657 49.0
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 2.8e-169 599.4 675 47.4
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 2.4e-168 596.3 675 47.1
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 4.5e-167 592.0 678 47.8
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 1.0e-166 590.9 678 47.6
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 8.5e-166 587.8 678 47.6
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 5.1e-163 578.6 460 61.3
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 2.5e-162 576.2 685 47.0
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 5.0e-158 562.0 672 45.4
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 8.5e-158 561.2 697 45.3
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 2.5e-157 559.7 481 58.4
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 5.5e-157 558.5 657 46.3
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 1.4e-152 543.9 670 44.5
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 1.8e-152 543.5 677 42.8
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 1.8e-152 543.5 663 45.6
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 9.1e-152 541.2 678 43.7
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 9.1e-152 541.2 678 42.6
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 1.5e-151 540.4 663 43.6
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 4.5e-151 538.9 677 42.8
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 1.0e-150 537.7 677 42.7
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 1.0e-150 537.7 673 43.7
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 5.0e-150 535.4 650 46.3
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 8.5e-150 534.6 706 43.2
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 8.5e-150 534.6 632 47.3
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 2.5e-149 533.1 678 42.9
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 2.5e-149 533.1 677 42.5
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 4.7e-148 528.9 677 43.1
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 3.1e-144 516.2 655 42.3
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 1.5e-138 497.3 450 57.6
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 3.3e-125 453.0 675 38.8
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 8.0e-124 448.4 539 45.5
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 3.0e-123 446.4 368 61.7
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 7.0e-120 435.3 679 37.6
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 1.6e-119 434.1 605 41.7
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 2.0e-119 433.7 668 39.1
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 2.1e-116 423.7 613 41.9
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 3.1e-115 419.9 691 36.8
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 1.3e-113 414.5 465 48.2
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 4.9e-113 412.5 563 41.4
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.8e-107 394.0 568 41.5
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 2.3e-107 393.7 621 37.5
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 1.2e-106 391.3 445 47.9
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 1.3e-105 387.9 466 45.3
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 4.9e-97 359.4 459 43.1
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 8.1e-92 342.0 310 55.8
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 2.9e-89 333.6 499 39.7
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 2.4e-75 287.3 364 44.2
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 1.7e-73 281.2 202 66.8
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.2e-63 248.4 235 54.9
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 1.6e-63 248.1 315 40.3
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 1.5e-61 241.5 177 66.1
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 1.7e-49 201.4 222 47.3
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 2.3e-46 191.0 142 62.0
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 3.0e-46 190.7 364 34.9
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 6.1e-39 166.4 116 69.0
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 2.0e-37 161.4 187 49.7
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 4.4e-37 160.2 105 74.3
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.2e-33 147.9 202 45.5
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 2.1e-31 141.4 194 41.8
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 3.6e-31 140.6 92 70.7
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 1.0e-30 139.0 89 75.3
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 2.8e-28 131.0 167 43.1
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 1.7e-25 121.7 204 37.7
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 5.0e-25 120.2 82 70.7
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 2.7e-23 114.4 83 57.8
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 4.7e-23 113.6 76 65.8
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 5.2e-22 110.2 76 64.5
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 7.5e-21 106.3 72 72.2
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 9.8e-21 105.9 80 56.2
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 9.8e-21 105.9 177 38.4
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 2.2e-20 104.8 194 39.7
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 3.1e-19 100.9 69 58.0
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 1.2e-18 99.0 261 29.5
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.7e-17 95.1 95 50.5
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.6e-15 88.6 133 39.1
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 6.1e-15 86.7 180 32.8
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 8.8e-14 82.8 53 73.6
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 4.4e-13 80.5 55 61.8
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 2.3e-09 68.2 66 50.0
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 1.5e-08 65.5 243 28.8
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 7.2e-08 63.2 41 65.9
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 2.8e-07 61.2 64 48.4
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 8.0e-07 59.7 36 72.2
unitig_749.g13781 Utricularia gibba HOM05D004484 ORTHO05D005370 1.8e-06 58.5 43 58.1


User provided reference genes

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