Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G99.12 Capsicum annuum HOM05D003820 ORTHO05D114897 6.4e-34 146.7 69 100.0
Medtr4g077320 Medicago truncatula HOM05D003820 ORTHO05D004540 1.6e-08 62.4 42 69.0
Nitab4.5_0001735g0140 Nicotiana tabacum HOM05D003820 ORTHO05D004540 3.5e-08 61.2 42 69.0
arahy.Tifrunner.gnm1.ann1.7FS7F8 Arachis hypogaea HOM05D003820 ORTHO05D004540 4.6e-08 60.8 42 66.7
Cpa.g.c38821 Carica papaya HOM05D003820 ORTHO05D004540 4.6e-08 60.8 42 66.7
Cc09_g00870 Coffea canephora HOM05D003820 ORTHO05D004540 4.6e-08 60.8 42 66.7
Eucgr.H03283 Eucalyptus grandis HOM05D003820 ORTHO05D004540 4.6e-08 60.8 42 66.7
Glyma.10G073300 Glycine max HOM05D003820 ORTHO05D004540 4.6e-08 60.8 42 66.7
Glyma.13G154200 Glycine max HOM05D003820 ORTHO05D004540 4.6e-08 60.8 42 66.7
Hma1.2p1_0657F.1_g197170 Hydrangea macrophylla HOM05D003820 ORTHO05D004540 4.6e-08 60.8 42 66.7
Lj2g0013565 Lotus japonicus HOM05D003820 ORTHO05D004540 4.6e-08 60.8 42 66.7
Lj6g0008289 Lotus japonicus HOM05D003820 ORTHO05D004540 4.6e-08 60.8 42 66.7
MD05G1357700 Malus domestica HOM05D003820 ORTHO05D004540 4.6e-08 60.8 42 66.7
Phvul.007G152400 Phaseolus vulgaris HOM05D003820 ORTHO05D004540 4.6e-08 60.8 42 66.7
Phvul.008G270100 Phaseolus vulgaris HOM05D003820 ORTHO05D004540 4.6e-08 60.8 42 66.7
Prupe.4G010400 Prunus persica HOM05D003820 ORTHO05D004540 4.6e-08 60.8 42 66.7
Rhsim02G0099100 Rhododendron simsii HOM05D003820 ORTHO05D004540 4.6e-08 60.8 42 66.7
Sc17g0007740 Simmondsia chinensis HOM05D003820 ORTHO05D004540 4.6e-08 60.8 42 66.7
TAR626G0254 Trochodendron aralioides HOM05D003820 ORTHO05D004540 4.6e-08 60.8 42 66.7
vmacro15759 Vaccinium macrocarpon HOM05D003820 ORTHO05D004540 4.6e-08 60.8 42 66.7
VMungo0647G1639 Vigna mungo HOM05D003820 ORTHO05D004540 4.6e-08 60.8 42 66.7
SHI24460 Sapria himalayana HOM05D003820 ORTHO05D004540 6.0e-08 60.5 42 66.7
RcHm_v2.0_Chr5g0001511 Rosa chinensis HOM05D003820 ORTHO05D004540 7.9e-08 60.1 42 64.3
CANSAT56G3158 Cannabis sativa HOM05D003820 ORTHO05D004540 1.0e-07 59.7 42 64.3
CiPaw.10G077900 Carya illinoinensis HOM05D003820 ORTHO05D004540 1.0e-07 59.7 42 64.3
COL.COLO4_14642 Corchorus olitorius HOM05D003820 ORTHO05D004540 1.0e-07 59.7 42 64.3
Actinidia39270 Actinidia chinensis HOM05D003820 ORTHO05D004540 1.3e-07 59.3 42 64.3
Aqoxy3G02484 Aquilegia oxysepala HOM05D003820 ORTHO05D004540 1.3e-07 59.3 42 64.3
MSTRG.16027 Avicennia marina HOM05D003820 ORTHO05D004540 1.3e-07 59.3 42 64.3
Ca_00446_v3 Cicer arietinum L. HOM05D003820 ORTHO05D004540 1.3e-07 59.3 42 64.3
Dinv07403 Davidia involucrata HOM05D003820 ORTHO05D004540 1.3e-07 59.3 42 64.3
Duzib192G0171 Durio zibethinus HOM05D003820 ORTHO05D004540 1.3e-07 59.3 42 64.3
Duzib235G0001 Durio zibethinus HOM05D003820 ORTHO05D004540 1.3e-07 59.3 42 64.3
ECA233G4304 Erigeron canadensis HOM05D003820 ORTHO05D004540 1.3e-07 59.3 42 64.3
Migut.M01395 Erythranthe guttata HOM05D003820 ORTHO05D004540 1.3e-07 59.3 42 64.3
FvH4_6g03150 Fragaria vesca HOM05D003820 ORTHO05D004540 1.3e-07 59.3 42 64.3
FAN02G3088 Fragaria x ananassa HOM05D003820 ORTHO05D004540 1.3e-07 59.3 42 64.3
FAN09G3292 Fragaria x ananassa HOM05D003820 ORTHO05D004540 1.3e-07 59.3 42 64.3
FAN14G5460 Fragaria x ananassa HOM05D003820 ORTHO05D004540 1.3e-07 59.3 42 64.3
HanXRQChr05g0129131 Helianthus annuus HOM05D003820 ORTHO05D004540 1.3e-07 59.3 42 64.3
Lsat_1_v5_gn_7_13661 Lactuca sativa HOM05D003820 ORTHO05D004540 1.3e-07 59.3 42 64.3
Manes.01G126900 Manihot esculenta HOM05D003820 ORTHO05D004540 1.3e-07 59.3 42 64.3
Medtr4g077490 Medicago truncatula HOM05D003820 ORTHO05D004540 1.3e-07 59.3 42 64.3
Nitab4.5_0000443g0170 Nicotiana tabacum HOM05D003820 ORTHO05D004540 1.3e-07 59.3 42 64.3
Nitab4.5_0008965g0020 Nicotiana tabacum HOM05D003820 ORTHO05D004540 1.3e-07 59.3 42 64.3
Oeu015944.1 Olea europaea HOM05D003820 ORTHO05D004540 1.3e-07 59.3 42 64.3
PSO541G5704 Papaver somniferum HOM05D003820 ORTHO05D004540 1.3e-07 59.3 42 64.3
PSO675G6471 Papaver somniferum HOM05D003820 ORTHO05D004540 1.3e-07 59.3 42 64.3
Peaxi162Scf00199g00923 Petunia axillaris HOM05D003820 ORTHO05D004540 1.3e-07 59.3 42 64.3
Psat7g171280 Pisum sativum HOM05D003820 ORTHO05D004540 1.3e-07 59.3 42 64.3
SGA_v2.0_scaffold4G01876 Striga asiatica HOM05D003820 ORTHO05D004540 1.3e-07 59.3 42 64.3
TPR.G23689 Trifolium pratense HOM05D003820 ORTHO05D004540 1.3e-07 59.3 42 64.3
TPR.G29505 Trifolium pratense HOM05D003820 ORTHO05D004540 1.3e-07 59.3 42 64.3
Atru.chr1.2452 Acer truncatum HOM05D003820 ORTHO05D004540 1.8e-07 58.9 42 64.3
Haze_06920 Corylus avellana HOM05D003820 ORTHO05D004540 1.8e-07 58.9 42 64.3
Haze_06925 Corylus avellana HOM05D003820 ORTHO05D004540 1.8e-07 58.9 42 64.3
Lj2A261T37 Lonicera japonica HOM05D003820 ORTHO05D004540 1.8e-07 58.9 42 64.3
Manes.02G083800 Manihot esculenta HOM05D003820 ORTHO05D004540 1.8e-07 58.9 42 61.9
QL05p069714 Quercus lobata HOM05D003820 ORTHO05D004540 1.8e-07 58.9 42 61.9
QL10p037768 Quercus lobata HOM05D003820 ORTHO05D004540 1.8e-07 58.9 42 61.9
Aqoxy5G01269 Aquilegia oxysepala HOM05D003820 ORTHO05D004540 2.3e-07 58.5 42 64.3
PGR042G2289 Punica granatum HOM05D003820 ORTHO05D004540 2.3e-07 58.5 42 64.3
EL10Ac8g20189 Beta vulgaris HOM05D003820 ORTHO05D004540 3.0e-07 58.2 42 61.9
FvH4_3g00980 Fragaria vesca HOM05D003820 ORTHO05D004540 3.0e-07 58.2 42 61.9
FAN21G2909 Fragaria x ananassa HOM05D003820 ORTHO05D004540 3.0e-07 58.2 42 61.9
FAN25G1165 Fragaria x ananassa HOM05D003820 ORTHO05D004540 3.0e-07 58.2 42 61.9
PGR102G0671 Punica granatum HOM05D003820 ORTHO05D004540 3.0e-07 58.2 42 61.9
Actinidia11885 Actinidia chinensis HOM05D003820 ORTHO05D004540 3.9e-07 57.8 42 61.9
ATR0712G044 Amborella trichopoda HOM05D003820 ORTHO05D004540 3.9e-07 57.8 42 61.9
CAN.G1299.7 Capsicum annuum HOM05D003820 ORTHO05D004540 3.9e-07 57.8 42 61.9
COL.COLO4_19462 Corchorus olitorius HOM05D003820 ORTHO05D004540 3.9e-07 57.8 42 61.9
Gohir.A06G205300 Gossypium hirsutum HOM05D003820 ORTHO05D004540 3.9e-07 57.8 42 61.9
Gorai.010G250000 Gossypium raimondii HOM05D003820 ORTHO05D004540 3.9e-07 57.8 42 61.9
Lj2C282T7 Lonicera japonica HOM05D003820 ORTHO05D004540 3.9e-07 57.8 42 61.9
Nn1g07382 Nelumbo nucifera HOM05D003820 ORTHO05D004540 3.9e-07 57.8 42 61.9
Hund23407 Selenicereus undatus HOM05D003820 ORTHO05D004540 3.9e-07 57.8 42 61.9
Solyc02g068480.3 Solanum lycopersicum HOM05D003820 ORTHO05D004540 3.9e-07 57.8 42 61.9
Sopen02g017620 Solanum pennellii HOM05D003820 ORTHO05D004540 3.9e-07 57.8 42 61.9
PGSC0003DMG400009435 Solanum tuberosum HOM05D003820 ORTHO05D004540 3.9e-07 57.8 42 61.9
THA.LOC104812993 Tarenaya hassleriana HOM05D003820 ORTHO05D004540 3.9e-07 57.8 42 61.9
Zm00001eb225610 Zea mays HOM05D003820 ORTHO05D004540 3.9e-07 57.8 42 61.9
Ah.14g087640 Amaranthus hybridus HOM05D003820 ORTHO05D004540 5.1e-07 57.4 42 61.9
CARHR229260 Cardamine hirsuta HOM05D003820 ORTHO05D004540 5.1e-07 57.4 42 61.9
COL.COLO4_04224 Corchorus olitorius HOM05D003820 ORTHO05D004540 5.1e-07 57.4 41 61.0
Lalb_Chr03g0038011 Lupinus albus HOM05D003820 ORTHO05D004540 5.1e-07 57.4 42 61.9
Peaxi162Scf00177g00115 Petunia axillaris HOM05D003820 ORTHO05D004540 5.1e-07 57.4 42 61.9
Sabra16G0001800 Salix brachista HOM05D003820 ORTHO05D004540 5.1e-07 57.4 42 61.9
Sabra16G0016300 Salix brachista HOM05D003820 ORTHO05D004540 5.1e-07 57.4 42 61.9
Aa31LG6G4450 Aethionema arabicum HOM05D003820 ORTHO05D004540 6.7e-07 57.0 42 61.9
AL7G31260 Arabidopsis lyrata HOM05D003820 ORTHO05D004540 6.7e-07 57.0 42 61.9
AT4G22285 Arabidopsis thaliana HOM05D003820 ORTHO05D004540 6.7e-07 57.0 42 61.9
AT4G22350 Arabidopsis thaliana HOM05D003820 ORTHO05D004540 6.7e-07 57.0 42 61.9
AT4G22410 Arabidopsis thaliana HOM05D003820 ORTHO05D004540 6.7e-07 57.0 42 61.9
BcaNung01693 Brassica carinata HOM05D003820 ORTHO05D004540 6.7e-07 57.0 42 61.9
BcaNung02500 Brassica carinata HOM05D003820 ORTHO05D004540 6.7e-07 57.0 42 61.9
A01p13710 Brassica napus HOM05D003820 ORTHO05D004540 6.7e-07 57.0 42 61.9
A03p53480 Brassica napus HOM05D003820 ORTHO05D004540 6.7e-07 57.0 42 61.9
C01p16620 Brassica napus HOM05D003820 ORTHO05D004540 6.7e-07 57.0 42 61.9
C07p51810 Brassica napus HOM05D003820 ORTHO05D004540 6.7e-07 57.0 42 61.9
BolC1t01609H Brassica oleracea HOM05D003820 ORTHO05D004540 6.7e-07 57.0 42 61.9
BolC7t45683H Brassica oleracea HOM05D003820 ORTHO05D004540 6.7e-07 57.0 42 61.9
BraA01t01316Z Brassica rapa HOM05D003820 ORTHO05D004540 6.7e-07 57.0 42 61.9
BraA03t14414Z Brassica rapa HOM05D003820 ORTHO05D004540 6.7e-07 57.0 42 61.9
Carub.0007s1895 Capsella rubella HOM05D003820 ORTHO05D004540 6.7e-07 57.0 42 61.9
Thhalv10024723m.g Eutrema salsugineum HOM05D003820 ORTHO05D004540 6.7e-07 57.0 42 61.9
Potri.006G010100 Populus trichocarpa HOM05D003820 ORTHO05D004540 6.7e-07 57.0 42 61.9
Sabra06G0008300 Salix brachista HOM05D003820 ORTHO05D004540 6.7e-07 57.0 42 61.9
Sp7g20480 Schrenkiella parvula HOM05D003820 ORTHO05D004540 6.7e-07 57.0 42 61.9
ClCG01G010230 Citrullus lanatus HOM05D003820 ORTHO05D004540 8.7e-07 56.6 42 59.5
MELO3C025562.2 Cucumis melo HOM05D003820 ORTHO05D004540 8.7e-07 56.6 42 59.5
CsaV3_1G017170 Cucumis sativus L. HOM05D003820 ORTHO05D004540 8.7e-07 56.6 42 59.5
Pp3c2_2850 Physcomitrium patens HOM05D003820 ORTHO05D004540 8.7e-07 56.6 42 61.9
Sed0023864 Sechium edule HOM05D003820 ORTHO05D004540 8.7e-07 56.6 42 59.5
HPP92_017772 Vanilla planifolia HOM05D003820 ORTHO05D004540 8.7e-07 56.6 42 61.9
Ciclev10004667m.g Citrus clementina HOM05D003820 ORTHO05D004540 1.1e-06 56.2 42 59.5
MD10G1331700 Malus domestica HOM05D003820 ORTHO05D004540 1.1e-06 56.2 42 61.9
AagrBONN_evm.TU.Sc2ySwM_344.5496 Anthoceros agrestis HOM05D003820 ORTHO05D004540 1.5e-06 55.8 42 61.9
CDE04G0225 Ceratophyllum demersum HOM05D003820 ORTHO05D004540 1.5e-06 55.8 42 57.1
CDE07G0952 Ceratophyllum demersum HOM05D003820 ORTHO05D004540 1.5e-06 55.8 42 57.1
AUR62012795 Chenopodium quinoa HOM05D003820 ORTHO05D004540 1.5e-06 55.8 42 59.5
AUR62021859 Chenopodium quinoa HOM05D003820 ORTHO05D004540 1.5e-06 55.8 42 59.5
Gohir.A06G153180 Gossypium hirsutum HOM05D003820 ORTHO05D004540 1.5e-06 55.8 42 59.5
Gohir.D06G159900 Gossypium hirsutum HOM05D003820 ORTHO05D004540 1.5e-06 55.8 42 59.5
Gorai.010G186600 Gossypium raimondii HOM05D003820 ORTHO05D004540 1.5e-06 55.8 42 59.5
Lj6P617T46 Lonicera japonica HOM05D003820 ORTHO05D004540 1.5e-06 55.8 42 61.9
Potri.016G014000 Populus trichocarpa HOM05D003820 ORTHO05D004540 1.5e-06 55.8 42 59.5
Thecc.06G233400 Theobroma cacao HOM05D003820 ORTHO05D004540 1.5e-06 55.8 42 59.5
CBR_g53671 Chara braunii HOM05D003820 ORTHO05D004540 1.9e-06 55.5 42 61.9
DCAR_008620 Daucus carota HOM05D003820 ORTHO05D004540 1.9e-06 55.5 42 59.5
Mapoly0061s0070 Marchantia polymorpha HOM05D003820 ORTHO05D004540 1.9e-06 55.5 42 59.5
Os09g0407900 Oryza sativa ssp. japonica HOM05D003820 ORTHO05D004540 1.9e-06 55.5 42 57.1
SEGI_20748 Sequoiadendron giganteum HOM05D003820 ORTHO05D004540 1.9e-06 55.5 42 59.5
HanXRQChr03g0086521 Helianthus annuus HOM05D003820 ORTHO05D004540 2.5e-06 55.1 41 58.5
unitig_62.g23505 Utricularia gibba HOM05D003820 ORTHO05D004540 4.3e-06 54.3 42 57.1
MCO11G519 Micromonas commoda HOM05D003820 ORTHO05D004540 5.6e-06 53.9 42 54.8
SMO118G0007 Selaginella moellendorffii HOM05D003820 ORTHO05D004540 5.6e-06 53.9 42 54.8
Cre17.g721600 Chlamydomonas reinhardtii HOM05D003820 ORTHO05D004540 7.4e-06 53.5 42 54.8
HanXRQChr03g0086431 Helianthus annuus HOM05D003820 ORTHO05D004540 7.4e-06 53.5 41 58.5
HanXRQChr03g0086481 Helianthus annuus HOM05D003820 ORTHO05D004540 7.4e-06 53.5 41 58.5


User provided reference genes

Program Settings