Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 0.0e+00 1398.3 708 100.0
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 0.0e+00 1290.4 707 91.7
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 0.0e+00 1252.3 707 89.5
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 0.0e+00 1249.2 708 88.8
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 0.0e+00 1249.2 707 89.1
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 0.0e+00 1227.2 708 86.9
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 0.0e+00 1214.9 722 85.6
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 8.4e-307 1056.6 683 75.8
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 7.9e-305 1050.0 688 75.3
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 6.3e-302 1040.4 683 75.3
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 1.8e-293 1012.3 681 74.0
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 5.0e-291 1004.2 694 71.9
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 7.2e-290 1000.3 682 72.3
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 2.7e-289 998.4 682 73.6
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 1.1e-287 993.0 687 71.0
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 1.1e-285 986.5 683 71.3
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 1.2e-284 983.0 683 70.0
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 5.9e-284 980.7 687 70.6
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 2.3e-280 968.8 683 69.7
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 6.7e-280 967.2 688 71.5
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.1e-279 966.5 682 69.2
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 4.4e-279 964.5 665 71.0
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 5.7e-279 964.1 683 69.5
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 5.7e-279 964.1 670 70.4
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 1.7e-278 962.6 681 69.2
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 1.7e-278 962.6 683 70.1
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 2.8e-278 961.8 684 69.9
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 4.8e-278 961.1 687 69.1
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 4.8e-278 961.1 686 69.7
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 4.1e-277 958.0 683 68.7
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 5.3e-277 957.6 683 69.1
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 1.6e-276 956.1 683 69.1
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 2.0e-276 955.7 682 68.8
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 2.6e-276 955.3 667 70.2
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 4.5e-276 954.5 738 64.6
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 5.5e-274 947.6 698 66.9
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 2.1e-273 945.7 683 68.5
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 2.7e-273 945.3 682 67.9
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 1.8e-272 942.6 684 68.4
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 4.0e-272 941.4 683 68.4
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 6.8e-272 940.6 682 67.9
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 4.4e-271 937.9 682 67.4
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 5.7e-271 937.6 683 67.9
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 5.4e-269 931.0 683 68.1
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 9.1e-269 930.2 683 69.4
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 1.2e-268 929.9 689 66.2
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 1.2e-268 929.9 683 66.0
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 3.5e-268 928.3 698 64.2
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 5.9e-268 927.5 683 65.9
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 2.9e-267 925.2 683 67.3
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 3.2e-266 921.8 683 65.7
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 4.2e-266 921.4 683 65.7
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 5.5e-266 921.0 683 65.6
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.7e-265 918.7 682 67.6
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 2.7e-265 918.7 682 67.6
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.7e-265 918.7 682 67.4
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 3.6e-265 918.3 683 65.6
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 3.6e-265 918.3 683 65.0
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 6.8e-264 914.1 682 65.5
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 8.8e-264 913.7 682 67.0
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 3.4e-263 911.8 682 66.3
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 2.2e-262 909.1 717 64.2
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 2.2e-262 909.1 684 65.1
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 4.9e-262 907.9 684 65.5
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 2.0e-260 902.5 658 67.2
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 4.5e-260 901.4 683 65.7
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 2.3e-259 899.0 712 63.2
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 4.2e-258 894.8 698 64.6
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 2.8e-257 892.1 683 65.3
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 4.0e-256 888.3 683 65.4
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 6.8e-256 887.5 682 64.1
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 1.2e-255 886.7 682 64.1
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 1.3e-251 873.2 707 61.4
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 1.4e-248 863.2 684 61.8
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 6.8e-248 860.9 684 61.7
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 2.6e-247 859.0 684 61.7
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 8.6e-243 844.0 683 60.5
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 3.1e-240 835.5 656 64.8
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.2e-239 833.6 685 61.2
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 2.0e-239 832.8 588 69.4
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 1.3e-238 830.1 716 59.4
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 2.4e-237 825.9 685 59.3
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 2.4e-237 825.9 684 58.5
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 5.4e-237 824.7 684 58.9
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 9.2e-237 823.9 684 58.9
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 9.2e-237 823.9 685 59.0
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 3.5e-236 822.0 690 58.4
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 4.6e-236 821.6 675 58.5
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 2.5e-234 815.8 685 58.7
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 1.2e-233 813.5 700 59.3
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 2.1e-233 812.8 670 59.1
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 6.2e-233 811.2 683 58.6
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 8.1e-233 810.8 663 62.4
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 3.1e-232 808.9 671 59.2
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 4.7e-225 785.0 602 65.1
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 3.1e-224 782.3 673 59.3
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 1.6e-212 743.4 686 56.3
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 3.4e-207 725.7 551 64.4
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 5.8e-207 724.9 573 63.7
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 2.9e-198 696.0 703 53.3
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 4.9e-198 695.3 660 56.1
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 5.0e-190 668.7 708 49.6
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 4.2e-189 665.6 492 67.5
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 7.2e-189 664.8 454 72.5
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 3.9e-187 659.1 670 53.6
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 3.3e-186 656.0 466 68.9
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 5.9e-183 645.2 710 47.2
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 1.8e-179 633.6 679 51.5
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 2.0e-178 630.2 648 50.9
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 1.8e-176 623.6 584 54.8
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 1.2e-175 620.9 458 64.6
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 9.4e-173 611.3 671 48.7
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 1.5e-170 604.0 706 45.9
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 8.2e-161 571.6 629 46.1
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 1.7e-158 563.9 512 56.8
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 7.7e-151 538.5 377 68.2
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 2.9e-142 510.0 687 40.0
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 2.2e-113 414.1 639 36.5
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 2.9e-105 387.1 294 66.3
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 1.8e-83 314.7 204 74.0
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.8e-75 288.1 268 59.3
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 1.7e-73 281.6 190 71.1
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 1.3e-60 238.8 211 57.3
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 5.0e-57 226.9 334 42.2
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 2.2e-52 211.5 144 67.4
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 5.0e-49 200.3 164 61.6
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 1.2e-45 189.1 107 86.9
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 3.3e-45 187.6 115 82.6
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 1.7e-44 185.3 241 40.2
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 1.2e-42 179.1 267 40.1
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 1.2e-42 179.1 513 29.0
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 1.1e-40 172.6 192 53.1
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.5e-40 172.2 202 51.0
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 2.1e-39 168.3 150 62.0
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 1.8e-38 165.2 90 87.8
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 8.8e-38 162.9 126 65.9
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 9.8e-37 159.5 116 66.4
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 3.5e-34 151.0 177 48.0
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 5.9e-34 150.2 201 42.8
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 7.7e-34 149.8 92 75.0
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 8.3e-28 129.8 93 63.4
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.4e-27 129.0 89 68.5
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 1.6e-26 125.6 72 86.1
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 1.0e-25 122.9 92 59.8
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.2e-21 109.4 133 50.4
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 3.4e-21 107.8 191 37.7
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 2.9e-20 104.8 168 39.9
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 9.2e-19 99.8 188 38.3
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 4.6e-18 97.4 62 80.6
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 2.8e-15 88.2 259 30.5
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 5.2e-14 84.0 62 64.5
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 9.8e-13 79.7 81 48.1
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 2.9e-12 78.2 55 63.6
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 4.9e-12 77.4 116 38.8
Oeu032522.1 Olea europaea HOM05D004484 ORTHO05D005370 1.1e-11 76.3 70 55.7
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.4e-11 75.9 62 59.7
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 1.6e-10 72.4 47 68.1
AagrBONN_evm.TU.Sc2ySwM_368.3370 Anthoceros agrestis HOM05D004484 ORTHO05D005370 3.9e-09 67.8 111 34.2
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 1.9e-08 65.5 556 22.5
Hma1.2p1_1470F.1_g285600 Hydrangea macrophylla HOM05D000467 ORTHO05D011800 1.8e-06 58.9 47 57.4


User provided reference genes

Program Settings