Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32365 Brassica carinata HOM05D011209 ORTHO05D011495 4.9e-125 451.1 213 100.0
BcaNung06484 Brassica carinata HOM05D011209 ORTHO05D011495 1.3e-93 346.7 161 100.0
BolC9t59793H Brassica oleracea HOM05D002594 ORTHO05D011495 2.1e-88 329.3 159 97.5
BcaC07g41292 Brassica carinata HOM05D011209 ORTHO05D011495 3.6e-27 125.9 147 46.9
BcaC07g41293 Brassica carinata HOM05D011209 ORTHO05D011495 3.6e-27 125.9 147 46.9
BcaNung06316 Brassica carinata HOM05D011209 ORTHO05D011495 3.6e-27 125.9 69 88.4
A09p59680 Brassica napus HOM05D011209 ORTHO05D011495 3.6e-27 125.9 147 46.9
C08p43020 Brassica napus HOM05D011209 ORTHO05D011495 3.6e-27 125.9 147 46.9
BolC8t51854H Brassica oleracea HOM05D011209 ORTHO05D011495 3.6e-27 125.9 147 46.9
BolC8t51856H Brassica oleracea HOM05D011209 ORTHO05D011495 3.6e-27 125.9 147 46.9
BolC8t51857H Brassica oleracea HOM05D011209 ORTHO05D011495 3.6e-27 125.9 147 46.9
BraA09t41345Z Brassica rapa HOM05D011209 ORTHO05D011495 3.6e-27 125.9 147 46.9
C08p14840 Brassica napus HOM05D002594 ORTHO05D003499 4.0e-18 95.9 159 37.1
BolC8t51855H Brassica oleracea HOM05D011209 ORTHO05D011495 1.5e-17 94.0 147 38.1
BcaB03g13525 Brassica carinata HOM05D002594 ORTHO05D011495 1.7e-16 90.5 150 36.7
AL6G21150 Arabidopsis lyrata HOM05D002594 ORTHO05D011495 2.4e-15 86.7 170 32.9
Lalb_Chr06g0165601 Lupinus albus HOM05D002594 ORTHO05D003499 4.1e-15 85.9 167 31.7
AL6G16600 Arabidopsis lyrata HOM05D002594 ORTHO05D019719 1.3e-13 80.9 148 36.5
Manes.04G066600 Manihot esculenta HOM05D002594 ORTHO05D003499 1.3e-13 80.9 182 30.2
Lj1A1151T81 Lonicera japonica HOM05D002594 ORTHO05D003499 1.7e-13 80.5 180 30.0
Medtr8g106170 Medicago truncatula HOM05D002594 ORTHO05D003499 1.7e-13 80.5 179 28.5
Cpa.g.sc1346.3 Carica papaya HOM05D002594 ORTHO05D003499 3.0e-13 79.7 183 28.4
Potri.007G070700 Populus trichocarpa HOM05D002594 ORTHO05D003499 3.0e-13 79.7 183 29.5
AL1G48800 Arabidopsis lyrata HOM05D002594 ORTHO05D003499 3.9e-13 79.3 172 30.2
PRCOL_00002654 Prasinoderma coloniale HOM05D002594 ORTHO05D003499 3.9e-13 79.3 158 32.3
TPR.G26451 Trifolium pratense HOM05D002594 ORTHO05D003499 3.9e-13 79.3 160 30.6
AT1G14650 Arabidopsis thaliana HOM05D002594 ORTHO05D003499 6.6e-13 78.6 179 29.1
C04p52400 Brassica napus HOM05D002594 ORTHO05D011495 6.6e-13 78.6 162 33.3
Ciclev10014300m.g Citrus clementina HOM05D002594 ORTHO05D003499 6.6e-13 78.6 182 28.6
BcaC07g38750 Brassica carinata HOM05D002594 ORTHO05D003499 8.6e-13 78.2 176 30.1
C08p16810 Brassica napus HOM05D002594 ORTHO05D003499 8.6e-13 78.2 176 30.1
BolC8t49302H Brassica oleracea HOM05D002594 ORTHO05D003499 8.6e-13 78.2 176 30.1
CSS0036069 Camellia sinensis var. sinensis HOM05D002594 ORTHO05D003499 8.6e-13 78.2 178 28.7
Glyma.10G264400 Glycine max HOM05D002594 ORTHO05D003499 8.6e-13 78.2 180 27.8
ClCG11G007770 Citrullus lanatus HOM05D002594 ORTHO05D003499 1.1e-12 77.8 181 29.3
THA.LOC104801765 Tarenaya hassleriana HOM05D002594 ORTHO05D003499 1.1e-12 77.8 178 29.2
Ah.15g095630 Amaranthus hybridus HOM05D002594 ORTHO05D003499 1.5e-12 77.4 181 28.7
MELO3C008151.2 Cucumis melo HOM05D002594 ORTHO05D003499 1.5e-12 77.4 179 29.1
ClCG06G002870 Citrullus lanatus HOM05D002594 ORTHO05D003499 1.9e-12 77.0 181 29.3
Thhalv10006856m.g Eutrema salsugineum HOM05D002594 ORTHO05D003499 1.9e-12 77.0 177 30.5
Potri.005G094600 Populus trichocarpa HOM05D002594 ORTHO05D003499 1.9e-12 77.0 183 29.0
BolC5t30004H Brassica oleracea HOM05D002594 ORTHO05D003499 2.5e-12 76.6 179 29.6
BcaC07g38683 Brassica carinata HOM05D002594 ORTHO05D003499 3.3e-12 76.3 125 36.0
A08p31890 Brassica napus HOM05D002594 ORTHO05D003499 3.3e-12 76.3 176 29.5
BraA08t35110Z Brassica rapa HOM05D002594 ORTHO05D003499 3.3e-12 76.3 176 29.5
CSS0003265 Camellia sinensis var. sinensis HOM05D002594 ORTHO05D003499 3.3e-12 76.3 178 27.5
Glyma.15G173200 Glycine max HOM05D002594 ORTHO05D003499 3.3e-12 76.3 179 29.1
Lalb_Chr02g0145401 Lupinus albus HOM05D002594 ORTHO05D003499 3.3e-12 76.3 183 28.4
Lalb_Chr02g0145451 Lupinus albus HOM05D002594 ORTHO05D003499 3.3e-12 76.3 183 28.4
Psat7g089360 Pisum sativum HOM05D002594 ORTHO05D003499 3.3e-12 76.3 181 28.7
Hund24438 Selenicereus undatus HOM05D002594 ORTHO05D003499 3.3e-12 76.3 180 28.3
EL10Ac2g04712 Beta vulgaris HOM05D002594 ORTHO05D003499 4.3e-12 75.9 180 28.3
BcaB02g06534 Brassica carinata HOM05D002594 ORTHO05D003499 4.3e-12 75.9 177 29.4
BraA06t24251Z Brassica rapa HOM05D002594 ORTHO05D003499 4.3e-12 75.9 179 29.6
Glyma.20G126000 Glycine max HOM05D002594 ORTHO05D003499 4.3e-12 75.9 179 29.6
Lsat_1_v5_gn_6_65541 Lactuca sativa HOM05D002594 ORTHO05D003499 4.3e-12 75.9 175 30.3
MBI03_g24017_MAGBIO Magnolia biondii HOM05D002594 ORTHO05D003499 4.3e-12 75.9 181 29.3
Sabra05G0078300 Salix brachista HOM05D002594 ORTHO05D003499 4.3e-12 75.9 183 28.4
TPR.G12859 Trifolium pratense HOM05D002594 ORTHO05D003499 4.3e-12 75.9 180 28.9
unitig_37.g12045 Utricularia gibba HOM05D002594 ORTHO05D003499 4.3e-12 75.9 177 29.4
vmacro07278 Vaccinium macrocarpon HOM05D002594 ORTHO05D003499 4.3e-12 75.9 178 28.7
A06p10690 Brassica napus HOM05D002594 ORTHO05D003499 5.6e-12 75.5 179 29.6
CDE02G3426 Ceratophyllum demersum HOM05D002594 ORTHO05D003499 5.6e-12 75.5 178 29.8
SalBow8G2582 Salvia bowleyana HOM05D002594 ORTHO05D003499 5.6e-12 75.5 177 28.8
BcaC05g25379 Brassica carinata HOM05D002594 ORTHO05D003499 7.3e-12 75.1 179 29.1
CAN.G809.36 Capsicum annuum HOM05D002594 ORTHO05D003499 9.5e-12 74.7 177 28.2
Ca_23469_v3 Cicer arietinum L. HOM05D002594 ORTHO05D003499 9.5e-12 74.7 179 28.5
Psat7g003760 Pisum sativum HOM05D002594 ORTHO05D003499 9.5e-12 74.7 181 28.2
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 9.5e-12 74.7 178 28.7
ATR0618G341 Amborella trichopoda HOM05D002594 ORTHO05D003499 1.2e-11 74.3 182 29.1
C05p12600 Brassica napus HOM05D002594 ORTHO05D003499 1.2e-11 74.3 181 28.7
Carub.0001s1441 Capsella rubella HOM05D002594 ORTHO05D003499 1.2e-11 74.3 181 28.7
PGR044G2151 Punica granatum HOM05D002594 ORTHO05D003499 1.2e-11 74.3 177 27.7
Thecc.02G311700 Theobroma cacao HOM05D002594 ORTHO05D003499 1.2e-11 74.3 190 27.9
Aa31LG1G18300 Aethionema arabicum HOM05D002594 ORTHO05D003499 1.6e-11 73.9 176 30.1
AL3G36590 Arabidopsis lyrata HOM05D009193 ORTHO05D014392 1.6e-11 73.9 153 31.4
MSTRG.7588 Avicennia marina HOM05D002594 ORTHO05D003499 1.6e-11 73.9 180 30.0
Nitab4.5_0000688g0290 Nicotiana tabacum HOM05D002594 ORTHO05D003499 1.6e-11 73.9 177 29.4
SHI18003 Sapria himalayana HOM05D002594 ORTHO05D003499 1.6e-11 73.9 181 28.2
SGA_v2.0_scaffold423G51465 Striga asiatica HOM05D002594 ORTHO05D003499 1.6e-11 73.9 180 29.4
C02p08220 Brassica napus HOM05D017680 ORTHO05D014392 2.1e-11 73.6 166 30.7
ECA233G2844 Erigeron canadensis HOM05D002594 ORTHO05D003499 2.1e-11 73.6 180 29.4
Glyma.09G007700 Glycine max HOM05D002594 ORTHO05D003499 2.1e-11 73.6 182 28.0
HanXRQChr17g0538361 Helianthus annuus HOM05D002594 ORTHO05D003499 2.1e-11 73.6 180 30.0
Lj3g0008201 Lotus japonicus HOM05D002594 ORTHO05D003499 2.1e-11 73.6 181 27.6
CARHR015140 Cardamine hirsuta HOM05D002594 ORTHO05D003499 2.8e-11 73.2 178 28.7
Sc21g0005370 Simmondsia chinensis HOM05D002594 ORTHO05D003499 2.8e-11 73.2 180 28.9
Atru.chr4.1090 Acer truncatum HOM05D002594 ORTHO05D003499 3.6e-11 72.8 184 27.7
Actinidia06681 Actinidia chinensis HOM05D002594 ORTHO05D003499 3.6e-11 72.8 182 28.0
Nitab4.5_0002162g0020 Nicotiana tabacum HOM05D002594 ORTHO05D003499 3.6e-11 72.8 177 29.4
Phvul.007G037600 Phaseolus vulgaris HOM05D002594 ORTHO05D003499 3.6e-11 72.8 183 26.8
Dinv05869 Davidia involucrata HOM05D002594 ORTHO05D003499 4.7e-11 72.4 182 27.5
FvH4_4g07440 Fragaria vesca HOM05D002594 ORTHO05D003499 4.7e-11 72.4 180 29.4
Nn7g37178 Nelumbo nucifera HOM05D002594 ORTHO05D003499 4.7e-11 72.4 182 28.0
Peaxi162Scf00036g01621 Petunia axillaris HOM05D002594 ORTHO05D003499 4.7e-11 72.4 180 27.8
VMungo0720G1145 Vigna mungo HOM05D002594 ORTHO05D003499 4.7e-11 72.4 183 26.8
AL7G39860 Arabidopsis lyrata HOM05D002594 ORTHO05D012777 6.2e-11 72.0 153 32.7
FAN12G4354 Fragaria x ananassa HOM05D002594 ORTHO05D003499 6.2e-11 72.0 180 28.9
Sed0006467 Sechium edule HOM05D002594 ORTHO05D003499 6.2e-11 72.0 181 27.1
SEGI_11496 Sequoiadendron giganteum HOM05D002594 ORTHO05D003499 6.2e-11 72.0 178 27.5
Sopen04g001740 Solanum pennellii HOM05D002594 ORTHO05D003499 6.2e-11 72.0 177 28.2
PGSC0003DMG400007322 Solanum tuberosum HOM05D002594 ORTHO05D003499 6.2e-11 72.0 174 28.7
BcaB03g13089 Brassica carinata HOM05D002594 ORTHO05D003499 8.1e-11 71.6 175 29.1
BolC2t06744H Brassica oleracea HOM05D017680 ORTHO05D014392 8.1e-11 71.6 166 30.7
CAN.G150.2 Capsicum annuum HOM05D002594 ORTHO05D003499 8.1e-11 71.6 177 28.2
Cc09_g04870 Coffea canephora HOM05D002594 ORTHO05D003499 8.1e-11 71.6 180 27.8
Duzib248G1457 Durio zibethinus HOM05D002594 ORTHO05D003499 8.1e-11 71.6 188 27.7
Migut.B01299 Erythranthe guttata HOM05D002594 ORTHO05D003499 8.1e-11 71.6 177 28.8
Solyc02g081960.3 Solanum lycopersicum HOM05D002594 ORTHO05D003499 8.1e-11 71.6 176 28.4
Sopen02g026590 Solanum pennellii HOM05D002594 ORTHO05D003499 8.1e-11 71.6 176 28.4
TWI74G1222 Tripterygium wilfordii HOM05D002594 ORTHO05D003499 8.1e-11 71.6 180 27.8
Aqoxy5G03555 Aquilegia oxysepala HOM05D002594 ORTHO05D003499 1.1e-10 71.2 168 29.2
Cc00_g29290 Coffea canephora HOM05D002594 ORTHO05D003499 1.1e-10 71.2 164 30.5
Eucgr.J00854 Eucalyptus grandis HOM05D002594 ORTHO05D003499 1.1e-10 71.2 180 28.9
Rhsim03G0093900 Rhododendron simsii HOM05D002594 ORTHO05D003499 1.1e-10 71.2 178 29.8
Sp1g13010 Schrenkiella parvula HOM05D002594 ORTHO05D003499 1.1e-10 71.2 177 27.7
Solyc04g005690.4 Solanum lycopersicum HOM05D002594 ORTHO05D003499 1.1e-10 71.2 177 28.2
PGSC0003DMG400002827 Solanum tuberosum HOM05D002594 ORTHO05D003499 1.1e-10 71.2 177 28.2
TAR371G1001 Trochodendron aralioides HOM05D002594 ORTHO05D003499 1.1e-10 71.2 181 27.6
AUR62022810 Chenopodium quinoa HOM05D002594 ORTHO05D003499 1.4e-10 70.9 181 28.2
COL.COLO4_27671 Corchorus olitorius HOM05D002594 ORTHO05D003499 1.4e-10 70.9 189 27.0
Duzib251G0736 Durio zibethinus HOM05D002594 ORTHO05D003499 1.4e-10 70.9 195 26.2
Mapoly0053s0080 Marchantia polymorpha HOM05D002594 ORTHO05D003499 1.4e-10 70.9 180 27.2
MCO06G134 Micromonas commoda HOM05D002594 ORTHO05D003499 1.4e-10 70.9 172 30.8
Nitab4.5_0002208g0020 Nicotiana tabacum HOM05D002594 ORTHO05D003499 1.4e-10 70.9 177 27.7
Pp3c23_15260 Physcomitrium patens HOM05D002594 ORTHO05D003499 1.4e-10 70.9 175 29.1
Prupe.1G077400 Prunus persica HOM05D002594 ORTHO05D003499 1.4e-10 70.9 183 27.3
SEGI_06729 Sequoiadendron giganteum HOM05D002594 ORTHO05D003499 1.4e-10 70.9 174 28.7
CiPaw.05G038700 Carya illinoinensis HOM05D002594 ORTHO05D003499 1.8e-10 70.5 184 26.6
Haze_03325 Corylus avellana HOM05D002594 ORTHO05D003499 1.8e-10 70.5 178 28.1
AT5G06520 Arabidopsis thaliana HOM05D002594 ORTHO05D019719 2.3e-10 70.1 150 35.3
Cfa010375 Carpinus fangiana HOM05D002594 ORTHO05D003499 2.3e-10 70.1 178 28.1
AUR62012173 Chenopodium quinoa HOM05D002594 ORTHO05D003499 2.3e-10 70.1 181 28.2
AUR62012853 Chenopodium quinoa HOM05D002594 ORTHO05D003499 2.3e-10 70.1 181 28.2
Peaxi162Scf00420g00339 Petunia axillaris HOM05D002594 ORTHO05D003499 2.3e-10 70.1 177 29.9
Aqoxy7G03613 Aquilegia oxysepala HOM05D002594 ORTHO05D003499 3.1e-10 69.7 184 27.2
Dinv31273 Davidia involucrata HOM05D002594 ORTHO05D003499 3.1e-10 69.7 181 26.5
QL09p022988 Quercus lobata HOM05D002594 ORTHO05D003499 3.1e-10 69.7 182 27.5
Gohir.A03G110200 Gossypium hirsutum HOM05D002594 ORTHO05D003499 4.0e-10 69.3 195 25.6
Prupe.3G162200 Prunus persica HOM05D002594 ORTHO05D003499 4.0e-10 69.3 162 28.4
RcHm_v2.0_Chr4g0399901 Rosa chinensis HOM05D002594 ORTHO05D003499 4.0e-10 69.3 181 28.2
Actinidia05385 Actinidia chinensis HOM05D002594 ORTHO05D003499 5.2e-10 68.9 182 27.5
AL1G26610 Arabidopsis lyrata HOM05D002594 ORTHO05D003499 5.2e-10 68.9 176 28.4
FAN07G2380 Fragaria x ananassa HOM05D002594 ORTHO05D003499 5.2e-10 68.9 182 28.6
FAN17G0285 Fragaria x ananassa HOM05D002594 ORTHO05D003499 5.2e-10 68.9 180 28.3
FAN22G1544 Fragaria x ananassa HOM05D002594 ORTHO05D003499 5.2e-10 68.9 182 28.6
A03p27640 Brassica napus HOM05D002594 ORTHO05D003499 6.8e-10 68.6 155 31.6
BolC3t15657H Brassica oleracea HOM05D002594 ORTHO05D003499 6.8e-10 68.6 155 31.6
FAN08G0321 Fragaria x ananassa HOM05D002594 ORTHO05D003499 6.8e-10 68.6 166 28.9
Gohir.D02G134800 Gossypium hirsutum HOM05D002594 ORTHO05D003499 6.8e-10 68.6 197 25.4
Pp3c18_11660 Physcomitrium patens HOM05D002594 ORTHO05D003499 6.8e-10 68.6 176 27.3
AagrBONN_evm.TU.Sc2ySwM_362.2665 Anthoceros agrestis HOM05D002594 ORTHO05D003499 8.9e-10 68.2 186 26.3
Oeu025252.1 Olea europaea HOM05D002594 ORTHO05D003499 8.9e-10 68.2 181 27.1
BcaB01g02923 Brassica carinata HOM05D002594 ORTHO05D003499 1.2e-09 67.8 154 31.8
MD13G1244100 Malus domestica HOM05D002594 ORTHO05D003499 1.2e-09 67.8 181 27.6
BcaC01g04832 Brassica carinata HOM05D002594 ORTHO05D003499 1.5e-09 67.4 155 31.0
Cre06.g307450 Chlamydomonas reinhardtii HOM05D002594 ORTHO05D003499 1.5e-09 67.4 172 30.2
Lj5g0018790 Lotus japonicus HOM05D002594 ORTHO05D003499 1.5e-09 67.4 185 28.1
Gorai.005G150700 Gossypium raimondii HOM05D002594 ORTHO05D003499 2.0e-09 67.0 201 24.9
C03p33350 Brassica napus HOM05D002594 ORTHO05D003499 2.6e-09 66.6 127 33.1
Lj2g0011534 Lotus japonicus HOM05D002594 ORTHO05D003499 2.6e-09 66.6 185 27.6
Os02g0245000 Oryza sativa ssp. japonica HOM05D002594 ORTHO05D003499 2.6e-09 66.6 186 25.3
Carub.0007s2621 Capsella rubella HOM05D002594 ORTHO05D012777 3.4e-09 66.2 160 30.6
FvH4_5g06370 Fragaria vesca HOM05D002594 ORTHO05D003499 3.4e-09 66.2 168 28.6
FAN18G4310 Fragaria x ananassa HOM05D002594 ORTHO05D003499 3.4e-09 66.2 167 28.1
SMO116G0104 Selaginella moellendorffii HOM05D002594 ORTHO05D003499 5.8e-09 65.5 186 26.9
BcaC03g18482 Brassica carinata HOM05D002594 ORTHO05D014392 7.5e-09 65.1 151 31.1
RcHm_v2.0_Chr1g0364581 Rosa chinensis HOM05D002594 ORTHO05D003499 1.7e-08 63.9 169 24.3
Zm00001eb128190 Zea mays HOM05D002594 ORTHO05D003499 1.7e-08 63.9 189 28.0
Prupe.3G079300 Prunus persica HOM05D002594 ORTHO05D003499 2.9e-08 63.2 175 25.1
RcHm_v2.0_Chr7g0192471 Rosa chinensis HOM05D002594 ORTHO05D003499 2.9e-08 63.2 169 24.3
C03p73940 Brassica napus HOM05D009193 ORTHO05D003499 4.9e-08 62.4 177 29.4
AT4G16200 Arabidopsis thaliana HOM05D002594 ORTHO05D012777 8.3e-08 61.6 150 28.7
BcaC01g01608 Brassica carinata HOM05D009193 ORTHO05D027771 8.3e-08 61.6 174 30.5
MD05G1356000 Malus domestica HOM05D002594 ORTHO05D003499 8.3e-08 61.6 141 27.0
RcHm_v2.0_Chr7g0191091 Rosa chinensis HOM05D002594 ORTHO05D003499 1.4e-07 60.8 167 26.9
RcHm_v2.0_Chr7g0192451 Rosa chinensis HOM05D002594 ORTHO05D003499 1.4e-07 60.8 168 23.8
Zm00001eb333220 Zea mays HOM05D002594 ORTHO05D003499 1.4e-07 60.8 189 25.9
Carub.0001s1440 Capsella rubella HOM05D002594 ORTHO05D003499 1.9e-07 60.5 164 27.4
BolC3t19675H Brassica oleracea HOM05D009193 ORTHO05D027771 2.4e-07 60.1 189 28.6
MSTRG.7590 Avicennia marina HOM05D002594 ORTHO05D003499 4.1e-07 59.3 164 28.7
BolC8t49118H Brassica oleracea HOM05D002594 ORTHO05D003499 5.4e-07 58.9 58 46.6
HPP92_018925 Vanilla planifolia HOM05D002594 ORTHO05D003499 5.4e-07 58.9 152 27.0
AL5G17020 Arabidopsis lyrata HOM05D002594 ORTHO05D012777 7.1e-07 58.5 176 25.6
AL1G30400 Arabidopsis lyrata HOM05D002594 ORTHO05D011495 9.2e-07 58.2 196 27.0
AL6G23490 Arabidopsis lyrata HOM05D002594 ORTHO05D038630 2.1e-06 57.0 125 32.0
BcaC03g18476 Brassica carinata HOM05D009193 ORTHO05D014392 2.1e-06 57.0 59 44.1
C02p08210 Brassica napus HOM05D002594 ORTHO05D014392 4.6e-06 55.8 136 31.6
Thhalv10015432m.g Eutrema salsugineum HOM05D002594 ORTHO05D011495 7.8e-06 55.1 76 44.7


User provided reference genes

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