Gene: PGSC0003DMG400007322

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400007322
  • Transcript Identifier PGSC0003DMT400018891
  • Gene Type Coding gene
  • Location ST4.03ch02 : 37626803-37629307 : positive

Gene Family Information

  • ID HOM05D002594
  • #Genes/#Species 263/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37424821
  • id PGSC0003DMG400007322.v4.03
  • uniprot M1ABB0

Descriptions

  • Description Spliceosome associated protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006396
IEA
InterProRNA processing
GO:0045292
IEA
GOA DatabasemRNA cis splicing, via spliceosome
GO:0045292
IEA
InterPromRNA cis splicing, via spliceosome
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0008380
IEA
GOA DatabaseRNA splicing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IBA
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005686
IBA
GOA DatabaseU2 snRNP
GO:0071004
IBA
GOA DatabaseU2-type prespliceosome
GO:0071013
IBA
GOA Databasecatalytic step 2 spliceosome

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035967 SWAP/Surp superfamily
IPR000061 SWAP/Surp
IPR000626 Ubiquitin-like domain
IPR035563 Splicing factor 3A subunit 1, ubiquitin domain
IPR022030 Splicing factor 3A subunit 1, conserved domain
IPR029071 Ubiquitin-like domain superfamily
IPR045146 Splicing factor 3A subunit 1
Mapman id Description
16.2.1.2.3.1 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3A complex.component SF3A1