Gene: AT1G14650

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G14650
  • Transcript Identifier AT1G14650.1
  • Gene Type Coding gene
  • Location Chr1 : 5028077-5030520 : positive

Gene Family Information

  • ID HOM05D002594
  • #Genes/#Species 263/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G14650.1
  • uniprot Q8RXF1

Descriptions

  • Description SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein
  • Computational description SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), Ubiquitin (InterPro:IPR000626), Pre-mRNA splicing factor PRP21 like protein (InterPro:IPR022030), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (TAIR:AT1G14640.1); Has 37228 Blast hits to 22919 proteins in 1210 species: Archae - 39; Bacteria - 4240; Metazoa - 16399; Fungi - 5145; Plants - 6055; Viruses - 891; Other Eukaryotes - 4459 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045292
IEA
Gene OntologymRNA cis splicing, via spliceosome
GO:0045292
IEA
InterPromRNA cis splicing, via spliceosome
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006396
IEA
InterProRNA processing
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0000398
ISS
Gene OntologymRNA splicing, via spliceosome

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
ISS, IBA
Gene OntologyRNA binding1
GO:0003723
IEA
InterProRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0071013
IBA
Gene Ontologycatalytic step 2 spliceosome1
GO:0005686
IBA
Gene OntologyU2 snRNP1
GO:0071004
IBA
Gene OntologyU2-type prespliceosome1
GO:0005684
ISS
Gene OntologyU2-type spliceosomal complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035967 SWAP/Surp superfamily
IPR000626 Ubiquitin-like domain
IPR029071 Ubiquitin-like domain superfamily
IPR035563 Splicing factor 3A subunit 1, ubiquitin domain
IPR045146 Splicing factor 3A subunit 1
IPR000061 SWAP/Surp
IPR022030 Splicing factor 3A subunit 1, conserved domain
Mapman id Description
16.2.1.2.3.1 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3A complex.component SF3A1