Gene: Nitab4.5_0002162g0020
General Information
Structural Information
- Species Nicotiana tabacum
- Gene Identifier Nitab4.5_0002162g0020
- Transcript Identifier Nitab4.5_0002162g0020.1
- Gene Type Coding gene
- Location Nitab4.5_0002162 : 58066-63672 : negative
Gene Family Information
- ID HOM05D002594
- #Genes/#Species 263/96
- Phylogenetic origin
- ID ORTHO05D003499
- #Genes/#Species 220/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Nitab4.5_0002162g0020.1
- SR1-identifier Nta00g10590.1
Descriptions
- Description Ubiquitin supergroup, SWAP/Surp, Ubiquitin domain, Pre-mRNA splicing factor PRP21-like protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006396 | IEA | InterPro | RNA processing | |
| GO:0045292 | IEA | InterPro | mRNA cis splicing, via spliceosome |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0005515 | IEA | InterPro | protein binding |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR029071 | Ubiquitin-like domain superfamily |
| IPR035563 | Splicing factor 3A subunit 1, ubiquitin domain |
| IPR000061 | SWAP/Surp |
| IPR035967 | SWAP/Surp superfamily |
| IPR045146 | Splicing factor 3A subunit 1 |
| IPR000626 | Ubiquitin-like domain |
| IPR022030 | Splicing factor 3A subunit 1, conserved domain |
| Mapman id | Description |
|---|---|
| 16.2.1.2.3.1 | RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3A complex.component SF3A1 |