Gene: Sopen02g026590

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen02g026590
  • Transcript Identifier Sopen02g026590.1
  • Gene Type Coding gene
  • Location Spenn-ch02 : 49480468-49482978 : positive

Gene Family Information

  • ID HOM05D002594
  • #Genes/#Species 263/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen02g026590.1

Descriptions

  • Description SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein | FUNCTIONS IN: RNA binding | INVOLVED IN: RNA processing | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: SWAP/Surp , Ubiquitin , Pre-mRNA splicing factor PRP21 like protein , Ubiquitin supergroup | BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045292
IEA
InterPromRNA cis splicing, via spliceosome
GO:0006396
IEA
InterProRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding
GO:0005515
IEA
InterProprotein binding

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR045146 Splicing factor 3A subunit 1
IPR035563 Splicing factor 3A subunit 1, ubiquitin domain
IPR000061 SWAP/Surp
IPR035967 SWAP/Surp superfamily
IPR022030 Splicing factor 3A subunit 1, conserved domain
IPR000626 Ubiquitin-like domain
IPR029071 Ubiquitin-like domain superfamily
Mapman id Description
16.2.1.2.3.1 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3A complex.component SF3A1