Gene: Cre06.g307450
General Information
Structural Information
- Species Chlamydomonas reinhardtii
- Gene Identifier Cre06.g307450
- Transcript Identifier Cre06.g307450.t1.2
- Gene Type Coding gene
- Location chromosome_6 : 8459239-8465029 : positive
Gene Family Information
- ID HOM05D002594
- #Genes/#Species 263/96
- Phylogenetic origin
- ID ORTHO05D003499
- #Genes/#Species 220/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id Cre06.g307450.v5.5
- pacid 30779768
- alias g7120.t1
- geneName SPL1
- uniprot A8IMT5
Descriptions
- Description SF3A1 splicing factor 3a, subunit 1. The splicing factor 3a heterotrimer includes subunits 1, 2 and 3 and is necessary for the in vitro conversion of 15S U2 snRNP into an active 17S particle that performs pre-mRNA splicing. Subunit 1 belongs to the SURP
- Description SF3A1 splicing factor 3a, subunit 1
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006397 | IEA | GOA Database | mRNA processing | |
| GO:0008380 | IEA | GOA Database | RNA splicing | |
| GO:0045292 | IEA | GOA Database | mRNA cis splicing, via spliceosome | |
| GO:0045292 | IEA | InterPro | mRNA cis splicing, via spliceosome | |
| GO:0006396 | IEA | GOA Database | RNA processing | |
| GO:0006396 | IEA | InterPro | RNA processing |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0005515 | IEA | InterPro | protein binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005681 | IEA | GOA Database | spliceosomal complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR022030 | Splicing factor 3A subunit 1, conserved domain |
| IPR029071 | Ubiquitin-like domain superfamily |
| IPR035967 | SWAP/Surp superfamily |
| IPR000626 | Ubiquitin-like domain |
| IPR045146 | Splicing factor 3A subunit 1 |
| IPR035563 | Splicing factor 3A subunit 1, ubiquitin domain |
| IPR000061 | SWAP/Surp |
| Mapman id | Description |
|---|---|
| 16.2.1.2.3.1 | RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3A complex.component SF3A1 |