Gene: Solyc02g081960.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc02g081960.3
  • Transcript Identifier Solyc02g081960.3.1
  • Gene Type Coding gene
  • Location SL4.0ch02 : 43704311-43706821 : positive

Gene Family Information

  • ID HOM05D002594
  • #Genes/#Species 263/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc02g081960.3.1
  • uniprot A0A3Q7F6K5
  • gene_id Solyc02g081960

Descriptions

  • Description SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (AHRD V3.3 *** F4HW92_ARATH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045292
IEA
GOA DatabasemRNA cis splicing, via spliceosome
GO:0045292
IEA
InterPromRNA cis splicing, via spliceosome
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006396
IEA
InterProRNA processing
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0008380
IEA
GOA DatabaseRNA splicing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IBA
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0071013
IBA
GOA Databasecatalytic step 2 spliceosome
GO:0071004
IBA
GOA DatabaseU2-type prespliceosome
GO:0005686
IBA
GOA DatabaseU2 snRNP

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR045146 Splicing factor 3A subunit 1
IPR000626 Ubiquitin-like domain
IPR035563 Splicing factor 3A subunit 1, ubiquitin domain
IPR000061 SWAP/Surp
IPR035967 SWAP/Surp superfamily
IPR029071 Ubiquitin-like domain superfamily
IPR022030 Splicing factor 3A subunit 1, conserved domain
Mapman id Description
16.2.1.2.3.1 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3A complex.component SF3A1