Gene: AT4G16200
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G16200
- Transcript Identifier AT4G16200.1
- Gene Type Coding gene
- Location Chr4 : 9175649-9176565 : positive
Gene Family Information
- ID HOM05D002594
- #Genes/#Species 263/96
- Phylogenetic origin
- ID ORTHO05D012777
- #Genes/#Species 20/7
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT4G16200.1
- uniprot O23467
Descriptions
- Description SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
- Computational description SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (TAIR:AT1G14650.2); Has 808 Blast hits to 528 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 376; Fungi - 161; Plants - 201; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0045292 | IEA | Gene Ontology | mRNA cis splicing, via spliceosome | |
| GO:0045292 | IEA | InterPro | mRNA cis splicing, via spliceosome | |
| GO:0006396 | IEA | GOA Database | RNA processing | |
| GO:0006396 | IEA | InterPro | RNA processing |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0003723 | IBA | Gene Ontology | RNA binding | 1 |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0005515 | ISO | PLAZA Homology (enrichment) | protein binding | HOM05D002594 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0071004 | IBA | Gene Ontology | U2-type prespliceosome | 1 |
| GO:0005686 | IBA | Gene Ontology | U2 snRNP | 1 |
| GO:0071013 | IBA | Gene Ontology | catalytic step 2 spliceosome | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |