Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 0.0e+00 1386.7 706 100.0
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 0.0e+00 1136.7 715 80.4
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 0.0e+00 1112.1 726 78.7
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 9.7e-295 1016.5 710 75.2
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 3.1e-277 958.4 696 70.3
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 8.5e-267 923.7 715 65.3
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 4.7e-265 917.9 611 75.9
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 4.5e-260 901.4 715 63.2
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 1.7e-259 899.4 713 63.7
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 2.9e-259 898.7 711 63.0
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 3.6e-257 891.7 708 63.1
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 2.3e-256 889.0 711 64.1
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 6.8e-256 887.5 711 61.5
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 1.2e-255 886.7 721 63.0
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 2.0e-255 885.9 711 62.7
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 2.0e-255 885.9 699 65.5
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.6e-255 885.6 710 63.4
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 3.4e-255 885.2 716 62.6
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 7.5e-255 884.0 715 62.5
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 3.7e-254 881.7 711 63.3
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 4.8e-254 881.3 716 62.3
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 1.8e-253 879.4 715 63.1
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 2.4e-253 879.0 707 61.4
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 5.4e-253 877.9 772 59.3
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 5.4e-253 877.9 715 62.8
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 7.0e-253 877.5 712 61.7
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 2.0e-252 875.9 710 62.0
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 2.7e-252 875.5 715 62.1
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 3.5e-252 875.2 712 62.5
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 7.7e-252 874.0 712 61.1
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 2.9e-251 872.1 715 62.9
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 2.9e-251 872.1 746 60.6
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 2.9e-251 872.1 716 62.3
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 3.8e-251 871.7 711 62.6
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 1.1e-250 870.2 715 61.0
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 1.9e-250 869.4 711 60.5
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 5.5e-250 867.8 715 61.7
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 7.2e-250 867.5 711 60.5
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 4.7e-249 864.8 711 61.9
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 8.0e-249 864.0 715 62.0
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 2.3e-248 862.4 717 62.1
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 8.9e-248 860.5 716 60.9
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 2.6e-247 859.0 716 62.0
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 2.6e-247 859.0 712 60.5
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 3.4e-247 858.6 712 62.1
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 1.7e-246 856.3 720 62.8
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 2.2e-246 855.9 714 61.6
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.2e-246 855.9 716 60.6
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 2.2e-246 855.9 721 60.3
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 2.8e-246 855.5 713 61.0
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 8.3e-246 854.0 713 60.2
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 8.3e-246 854.0 694 61.2
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 1.8e-245 852.8 716 61.5
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 2.4e-245 852.4 711 61.9
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 7.0e-245 850.9 716 60.5
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 9.2e-245 850.5 716 60.5
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.2e-244 850.1 719 61.3
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 1.6e-244 849.7 711 60.2
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 2.7e-244 849.0 713 61.0
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.7e-244 849.0 716 60.3
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 4.5e-244 848.2 713 61.3
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 5.9e-244 847.8 716 60.3
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.3e-243 846.7 713 61.3
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 1.3e-243 846.7 713 61.3
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 2.9e-243 845.5 716 61.0
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 9.5e-242 840.5 712 60.0
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 1.2e-241 840.1 716 61.0
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 2.6e-239 832.4 680 61.6
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 2.4e-237 825.9 715 60.1
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 3.2e-237 825.5 709 60.1
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 7.0e-237 824.3 715 58.7
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 2.5e-234 815.8 730 58.1
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 7.3e-234 814.3 714 58.4
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 1.6e-233 813.1 714 58.4
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 1.6e-233 813.1 711 58.2
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 1.1e-232 810.4 714 58.4
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 6.8e-232 807.7 716 59.2
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 1.1e-226 790.4 710 58.3
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 3.6e-225 785.4 711 57.4
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 4.0e-224 781.9 716 56.0
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.2e-223 780.4 718 57.1
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 5.8e-223 778.1 701 57.2
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 8.3e-222 774.2 715 55.7
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 3.2e-221 772.3 711 55.6
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 1.6e-220 770.0 715 55.5
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 3.5e-220 768.8 610 63.8
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 4.6e-220 768.5 711 55.4
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 6.0e-220 768.1 711 55.6
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 7.8e-220 767.7 711 55.8
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 2.3e-219 766.1 749 54.2
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 3.9e-219 765.4 714 55.5
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 1.2e-217 760.4 683 57.7
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 4.0e-216 755.4 691 56.2
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 3.4e-215 752.3 698 55.7
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 9.9e-215 750.7 687 56.3
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 5.3e-208 728.4 693 54.8
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 8.7e-203 711.1 707 54.5
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 6.2e-193 678.3 547 62.9
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 3.4e-183 646.0 727 50.2
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 1.3e-182 644.0 684 52.6
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 8.4e-182 641.3 711 49.4
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 5.1e-179 632.1 713 48.2
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 8.2e-177 624.8 703 50.8
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 9.0e-176 621.3 592 54.7
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 9.4e-173 611.3 518 60.8
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 1.6e-172 610.5 610 53.1
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.5e-170 604.0 482 63.7
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 3.3e-170 602.8 459 65.8
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 4.5e-167 592.4 706 48.7
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 3.6e-164 582.8 458 61.8
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 1.4e-163 580.9 677 48.4
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 1.4e-163 580.9 715 43.9
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 8.8e-155 551.6 697 45.3
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 5.7e-154 548.9 515 56.7
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 1.8e-152 543.9 664 44.6
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 3.4e-146 523.1 381 66.9
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 1.2e-138 498.0 702 39.9
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 6.0e-111 406.0 446 45.1
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 3.8e-89 333.6 334 54.8
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 3.3e-77 293.9 203 67.5
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.7e-71 274.2 267 56.6
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 4.6e-71 273.5 222 59.9
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 3.8e-57 227.3 211 55.9
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 5.3e-51 206.8 164 62.8
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 7.7e-50 203.0 144 67.4
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 7.9e-47 193.0 359 38.2
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 1.1e-43 182.6 564 30.0
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 2.9e-41 174.5 244 41.8
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 1.5e-40 172.2 251 41.0
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 6.1e-39 166.8 190 51.6
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 4.1e-35 154.1 116 63.8
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 3.5e-34 151.0 105 69.5
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.0e-33 149.4 202 47.0
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 6.1e-31 140.2 126 60.3
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 4.0e-30 137.5 92 69.6
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 2.0e-29 135.2 96 65.6
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 4.1e-27 127.5 201 36.8
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 1.3e-25 122.5 153 43.8
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.1e-24 119.4 96 62.5
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 2.5e-24 118.2 97 59.8
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 4.0e-22 110.9 97 51.5
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 9.8e-21 106.3 94 56.4
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 1.1e-19 102.8 72 69.4
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 5.0e-17 94.0 81 56.8
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 2.5e-16 91.7 117 45.3
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 1.0e-14 86.3 191 32.5
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 1.4e-14 85.9 103 49.5
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 2.3e-14 85.1 67 52.2
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 2.3e-14 85.1 454 24.9
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.5e-13 82.4 133 38.3
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 4.9e-12 77.4 67 56.7
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 7.0e-11 73.6 186 29.0
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 1.3e-09 69.3 62 56.5
AagrBONN_evm.TU.Sc2ySwM_368.3370 Anthoceros agrestis HOM05D004484 ORTHO05D005370 3.9e-09 67.8 111 36.0
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 3.9e-09 67.8 52 61.5
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 3.9e-09 67.8 67 52.2
Hma1.2p1_1470F.1_g285600 Hydrangea macrophylla HOM05D000467 ORTHO05D011800 5.6e-08 63.9 52 63.5
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 9.5e-08 63.2 55 56.4
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 1.0e-06 59.7 143 29.4
Oeu032522.1 Olea europaea HOM05D004484 ORTHO05D005370 1.8e-06 58.9 49 55.1


User provided reference genes

Program Settings