Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 0.0e+00 1097.4 560 100.0
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 2.6e-250 868.6 567 79.5
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 9.2e-248 860.1 580 77.1
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 1.6e-247 859.4 578 77.2
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 1.7e-246 855.9 575 77.4
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 3.0e-246 855.1 581 77.6
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 5.0e-246 854.4 578 76.6
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 7.3e-245 850.5 579 76.2
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 9.5e-245 850.1 579 76.3
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 3.1e-243 845.1 579 76.0
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 9.8e-242 840.1 578 76.0
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 5.0e-238 827.8 556 76.6
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 4.0e-211 738.4 577 67.6
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 2.6e-186 656.0 588 58.3
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 5.9e-186 654.8 586 58.2
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 2.9e-185 652.5 584 58.4
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 2.5e-184 649.4 589 56.7
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 4.2e-184 648.7 587 57.1
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 4.2e-184 648.7 586 58.7
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 1.2e-183 647.1 585 57.9
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 1.2e-183 647.1 584 57.5
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 1.6e-183 646.7 531 67.2
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 1.0e-182 644.0 583 57.6
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 3.9e-182 642.1 585 56.4
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 8.7e-182 641.0 605 55.2
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 1.5e-181 640.2 590 56.8
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 1.9e-181 639.8 580 56.7
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 2.5e-181 639.4 579 57.9
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 2.5e-181 639.4 567 57.8
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 4.3e-181 638.6 588 56.5
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 2.8e-180 636.0 583 56.3
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 3.7e-180 635.6 587 57.1
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 3.7e-180 635.6 587 55.4
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 8.2e-180 634.4 588 57.0
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.4e-179 632.9 584 56.2
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 4.1e-179 632.1 585 55.4
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 6.9e-179 631.3 584 56.0
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 6.9e-179 631.3 606 55.4
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.2e-178 630.6 584 56.0
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.2e-178 630.6 587 56.0
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 2.6e-178 629.4 586 56.1
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 2.6e-178 629.4 583 55.1
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 4.5e-178 628.6 584 54.8
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 4.5e-178 628.6 584 55.8
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.0e-177 627.5 584 55.5
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 1.3e-177 627.1 586 55.1
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.7e-177 626.7 584 55.7
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 2.2e-177 626.3 580 55.3
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 6.5e-177 624.8 587 56.0
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 6.5e-177 624.8 583 54.0
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 6.5e-177 624.8 584 55.1
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 8.5e-177 624.4 583 55.9
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 1.4e-176 623.6 582 54.8
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 2.1e-175 619.8 582 56.2
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 2.7e-175 619.4 585 55.4
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 2.7e-175 619.4 566 56.4
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 3.6e-175 619.0 583 54.2
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 6.1e-175 618.2 615 54.6
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 7.9e-175 617.8 591 53.5
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 7.9e-175 617.8 584 54.6
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 1.0e-174 617.5 582 55.8
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 1.4e-174 617.1 585 55.7
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 3.0e-174 615.9 585 55.2
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 6.7e-174 614.8 580 55.3
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 1.1e-173 614.0 582 56.0
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.0e-173 613.2 583 54.7
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 3.3e-173 612.5 583 54.4
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 3.3e-173 612.5 642 50.9
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 7.4e-173 611.3 587 54.0
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 1.7e-172 610.1 586 55.1
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 2.8e-172 609.4 610 53.1
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 4.8e-172 608.6 583 53.9
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 4.8e-172 608.6 583 53.9
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 1.4e-171 607.1 576 55.4
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 1.4e-171 607.1 578 54.0
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 4.1e-171 605.5 578 54.2
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.5e-170 603.6 581 53.2
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 2.0e-170 603.2 587 54.3
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 4.5e-170 602.1 585 54.4
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 5.9e-170 601.7 581 53.0
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 7.7e-170 601.3 586 53.1
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 1.7e-169 600.1 598 53.2
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 5.2e-166 588.6 580 53.6
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 5.2e-166 588.6 556 55.2
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 6.7e-166 588.2 578 54.3
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 1.1e-165 587.4 583 52.8
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 4.4e-165 585.5 583 54.0
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 2.2e-164 583.2 588 53.7
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 6.3e-164 581.6 580 53.6
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 1.4e-163 580.5 580 53.8
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 2.6e-162 576.2 577 51.0
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 7.7e-162 574.7 582 52.4
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 2.9e-161 572.8 490 59.2
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 8.5e-161 571.2 585 52.5
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 1.8e-158 563.5 584 51.2
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 1.7e-153 547.0 578 51.4
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 2.5e-152 543.1 580 50.5
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 2.1e-151 540.0 605 50.9
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 1.3e-148 530.8 555 50.8
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 2.0e-146 523.5 577 50.8
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 2.5e-144 516.5 436 58.7
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 4.4e-141 505.8 532 51.1
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.4e-134 484.2 459 55.3
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 3.5e-130 469.5 413 55.2
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 1.4e-123 447.6 549 45.7
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 2.4e-123 446.8 592 44.3
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.4e-123 446.8 541 46.0
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 7.0e-123 445.3 547 46.3
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 1.2e-119 434.5 357 57.7
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 2.3e-118 430.3 588 41.8
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 1.2e-117 427.9 586 40.3
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 2.6e-117 426.8 606 41.7
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 4.4e-117 426.0 528 41.5
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 2.8e-111 406.8 465 48.2
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 2.9e-100 370.2 407 48.2
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 7.3e-96 355.5 581 36.7
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 5.8e-93 345.9 276 60.1
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 3.5e-90 336.7 408 42.9
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 7.9e-74 282.3 297 52.9
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 5.5e-67 259.6 202 60.4
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.5e-64 251.5 322 45.3
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 9.7e-64 248.8 190 61.6
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 3.9e-57 226.9 253 52.6
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 8.5e-44 182.6 164 57.3
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 2.8e-39 167.5 141 52.5
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 3.1e-38 164.1 331 33.8
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 1.5e-32 145.2 114 60.5
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 4.4e-32 143.7 105 65.7
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 9.8e-32 142.5 383 30.0
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 1.3e-28 132.1 191 42.4
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 8.6e-28 129.4 88 65.9
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 4.2e-27 127.1 96 60.4
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 5.5e-27 126.7 91 67.0
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 9.5e-27 125.9 201 39.8
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 1.0e-25 122.5 222 37.4
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 1.7e-20 105.1 201 32.3
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 1.5e-19 102.1 72 66.7
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 1.6e-18 98.6 105 46.7
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 9.2e-14 82.8 76 55.3
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 1.2e-13 82.4 81 53.1
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 3.5e-13 80.9 81 51.9
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 3.0e-12 77.8 355 27.0
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 5.0e-12 77.0 186 29.0
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 2.5e-11 74.7 182 30.8
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 1.4e-09 68.9 163 31.9
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 4.0e-09 67.4 155 35.5
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 5.8e-08 63.5 123 35.0
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 9.8e-08 62.8 186 29.0
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 2.9e-07 61.2 53 52.8
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 3.2e-06 57.8 96 41.7


User provided reference genes

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