Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G31450 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 1.0e-218 763.1 378 100.0
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 2.0e-185 652.5 355 93.5
Carub.0004s1278 Capsella rubella HOM05D004358 ORTHO05D004960 2.2e-184 649.0 373 88.5
CARHR125100 Cardamine hirsuta HOM05D004358 ORTHO05D004960 9.8e-177 623.6 385 83.4
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 8.5e-173 610.5 378 83.3
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 8.0e-163 577.4 350 82.3
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 1.3e-160 570.1 396 75.5
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 1.7e-160 569.7 353 81.9
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 6.4e-160 567.8 409 75.1
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 7.0e-159 564.3 413 74.1
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 7.0e-159 564.3 396 75.0
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 1.5e-153 546.6 372 76.9
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 4.6e-150 535.0 345 79.4
AL1G15860 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 1.2e-142 510.4 389 66.6
THA.LOC104827388 Tarenaya hassleriana HOM05D004358 ORTHO05D004960 2.1e-139 499.6 410 63.2
AT1G05900 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 4.0e-138 495.4 389 64.8
Carub.0001s0527 Capsella rubella HOM05D004358 ORTHO05D004960 2.1e-134 483.0 385 64.9
Thhalv10007955m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 1.7e-133 479.9 367 67.6
A09p67250 Brassica napus HOM05D004358 ORTHO05D004960 3.8e-128 462.2 335 69.6
BolC8t52682H Brassica oleracea HOM05D004358 ORTHO05D004960 4.9e-128 461.8 368 66.3
C08p51540 Brassica napus HOM05D004358 ORTHO05D004960 1.9e-127 459.9 353 67.4
Duzib151G0384 Durio zibethinus HOM05D004358 ORTHO05D004960 1.0e-125 454.1 349 66.5
Dinv22724 Davidia involucrata HOM05D004358 ORTHO05D004960 5.6e-124 448.4 354 64.1
Cfa015153 Carpinus fangiana HOM05D004358 ORTHO05D004960 1.6e-123 446.8 353 64.0
TWI59G0142 Tripterygium wilfordii HOM05D004358 ORTHO05D004960 4.8e-123 445.3 350 66.0
BcaC07g42102 Brassica carinata HOM05D004358 ORTHO05D004960 6.2e-123 444.9 374 62.3
COL.COLO4_02723 Corchorus olitorius HOM05D004358 ORTHO05D004960 4.0e-122 442.2 351 64.4
BraA09t42058Z Brassica rapa HOM05D004358 ORTHO05D005739 5.3e-122 441.8 294 72.8
Ciclev10020813m.g Citrus clementina HOM05D004358 ORTHO05D004960 2.0e-121 439.9 333 66.1
Potri.007G127600 Populus trichocarpa HOM05D004358 ORTHO05D004960 7.6e-121 438.0 349 64.8
MD04G1007400 Malus domestica HOM05D004358 ORTHO05D004960 1.3e-120 437.2 344 64.8
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 8.4e-120 434.5 340 64.4
GSVIVG01010748001 Vitis vinifera HOM05D004358 ORTHO05D004960 1.6e-118 430.3 355 63.1
Actinidia39855 Actinidia chinensis HOM05D004358 ORTHO05D004960 4.6e-118 428.7 344 62.2
CANSAT78G2120 Cannabis sativa HOM05D004358 ORTHO05D004960 7.9e-118 427.9 336 64.6
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 1.9e-116 423.3 319 66.8
Nitab4.5_0005570g0020 Nicotiana tabacum HOM05D004358 ORTHO05D004960 7.4e-116 421.4 354 61.6
Prupe.1G191600 Prunus persica HOM05D004358 ORTHO05D004960 9.6e-116 421.0 343 63.8
TAR362G1164 Trochodendron aralioides HOM05D004358 ORTHO05D004960 4.8e-115 418.7 369 58.5
Hund03152 Selenicereus undatus HOM05D004358 ORTHO05D004960 1.1e-114 417.5 331 63.7
Cc00_g17220 Coffea canephora HOM05D004358 ORTHO05D004960 1.4e-114 417.2 346 61.6
CiPaw.02G055200 Carya illinoinensis HOM05D004358 ORTHO05D004960 6.9e-114 414.8 346 61.6
Sc13g0005360 Simmondsia chinensis HOM05D004358 ORTHO05D004960 9.0e-114 414.5 357 59.9
Sopen06g029780 Solanum pennellii HOM05D004358 ORTHO05D004960 1.5e-113 413.7 360 59.7
Gorai.011G146700 Gossypium raimondii HOM05D004358 ORTHO05D004960 2.6e-113 412.9 345 61.7
Lalb_Chr01g0003211 Lupinus albus HOM05D004358 ORTHO05D004960 2.6e-113 412.9 330 62.7
Solyc06g073400.3 Solanum lycopersicum HOM05D004358 ORTHO05D004960 2.6e-113 412.9 382 58.1
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 1.7e-112 410.2 282 71.3
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 2.9e-112 409.5 312 66.3
PSO732G0278 Papaver somniferum HOM05D004358 ORTHO05D004960 3.8e-112 409.1 353 60.1
MSTRG.6615 Avicennia marina HOM05D004358 ORTHO05D004960 4.9e-112 408.7 341 61.9
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 4.9e-112 408.7 312 66.3
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 6.4e-112 408.3 345 61.7
PSO675G5046 Papaver somniferum HOM05D004358 ORTHO05D004960 6.4e-112 408.3 353 59.8
arahy.Tifrunner.gnm1.ann1.CJKM5C Arachis hypogaea HOM05D004358 ORTHO05D004960 1.1e-111 407.5 353 58.6
CAN.G65.181 Capsicum annuum HOM05D004358 ORTHO05D004960 1.9e-111 406.8 340 61.8
Ah.13g072910 Amaranthus hybridus HOM05D004358 ORTHO05D004960 9.3e-111 404.4 322 62.1
Lj3g0009399 Lotus japonicus HOM05D004358 ORTHO05D004960 9.3e-111 404.4 336 62.2
VMungo1127G0908 Vigna mungo HOM05D004358 ORTHO05D004960 2.1e-110 403.3 344 60.5
Atru.chr3.1531 Acer truncatum HOM05D004358 ORTHO05D004960 3.5e-110 402.5 246 76.8
TPR.G34203 Trifolium pratense HOM05D004358 ORTHO05D004960 6.0e-110 401.7 295 67.8
Glyma.11G128600 Glycine max HOM05D004358 ORTHO05D004960 7.9e-110 401.4 339 60.2
ATR0686G198 Amborella trichopoda HOM05D004358 ORTHO05D004960 1.0e-109 401.0 347 59.1
Sabra07G0103600 Salix brachista HOM05D004358 ORTHO05D004960 1.0e-109 401.0 358 60.1
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 3.0e-109 399.4 349 58.7
MELO3C017721.2 Cucumis melo HOM05D004358 ORTHO05D004960 3.9e-109 399.1 345 60.9
CsaV3_4G003300 Cucumis sativus L. HOM05D004358 ORTHO05D004960 3.9e-109 399.1 341 61.0
Peaxi162Scf00375g00513 Petunia axillaris HOM05D004358 ORTHO05D004960 6.7e-109 398.3 330 62.4
FAN07G2248 Fragaria x ananassa HOM05D004358 ORTHO05D004960 1.1e-108 397.5 336 61.9
unitig_8.g4603 Utricularia gibba HOM05D004358 ORTHO05D004960 5.6e-108 395.2 278 68.0
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 7.4e-108 394.8 350 59.1
PGR142G0453 Punica granatum HOM05D004358 ORTHO05D004960 9.6e-108 394.4 341 58.7
SalBow7G0323 Salvia bowleyana HOM05D004358 ORTHO05D004960 2.8e-107 392.9 351 57.8
Sp1g04740 Schrenkiella parvula HOM05D004358 ORTHO05D004960 2.8e-107 392.9 347 60.5
Thecc.04G185400 Theobroma cacao HOM05D004358 ORTHO05D004960 4.8e-107 392.1 352 58.2
Atru.chr3.1534 Acer truncatum HOM05D004358 ORTHO05D004960 1.1e-106 391.0 253 74.7
Phvul.011G055100 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 1.1e-106 391.0 303 66.3
PSO732G0822 Papaver somniferum HOM05D004358 ORTHO05D004960 3.1e-106 389.4 379 54.6
TAR636G1513 Trochodendron aralioides HOM05D004358 ORTHO05D004960 1.2e-105 387.5 266 69.5
vmacro15647 Vaccinium macrocarpon HOM05D004358 ORTHO05D004960 3.4e-105 386.0 416 50.7
AUR62002292 Chenopodium quinoa HOM05D004358 ORTHO05D004960 4.5e-105 385.6 266 69.5
Gohir.D10G133000 Gossypium hirsutum HOM05D004358 ORTHO05D004960 7.6e-105 384.8 342 58.5
Rhsim02G0076600 Rhododendron simsii HOM05D004358 ORTHO05D004960 1.4e-103 380.6 505 44.8
Ciclev10020816m.g Citrus clementina HOM05D004358 ORTHO05D004960 1.9e-103 380.2 327 59.9
AUR62015399 Chenopodium quinoa HOM05D004358 ORTHO05D004960 1.2e-102 377.5 335 59.1
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 2.1e-102 376.7 337 59.6
Ca_20780_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 3.5e-102 375.9 328 58.8
CSS0013619 Camellia sinensis var. sinensis HOM05D004358 ORTHO05D004960 3.9e-101 372.5 357 56.3
ECA236G3148 Erigeron canadensis HOM05D004358 ORTHO05D004960 2.5e-100 369.8 338 55.0
EL10Ac3g05922 Beta vulgaris HOM05D004358 ORTHO05D004960 7.4e-100 368.2 356 55.9
Lsat_1_v5_gn_8_80540 Lactuca sativa HOM05D004358 ORTHO05D004960 9.6e-100 367.9 320 58.8
ECA236G1172 Erigeron canadensis HOM05D004358 ORTHO05D004960 1.8e-98 363.6 276 65.6
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 3.1e-98 362.8 282 62.8
SGA_v2.0_scaffold181G39728 Striga asiatica HOM05D004358 ORTHO05D004960 1.5e-97 360.5 361 54.3
PGSC0003DMG401006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 4.5e-97 359.0 318 58.2
Zm00001eb406830 Zea mays HOM05D004358 ORTHO05D004960 2.2e-96 356.7 313 55.3
CAN.G749.19 Capsicum annuum HOM05D004358 ORTHO05D004960 2.9e-96 356.3 310 59.0
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 6.5e-96 355.1 350 54.6
Sopen09g031880 Solanum pennellii HOM05D004358 ORTHO05D004960 1.2e-94 350.9 318 55.7
arahy.Tifrunner.gnm1.ann1.Z962T9 Arachis hypogaea HOM05D004358 ORTHO05D004960 4.6e-94 349.0 348 54.3
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 2.3e-93 346.7 333 54.1
Ca_01263_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 3.9e-93 345.9 246 67.5
Glyma.13G343700 Glycine max HOM05D004358 ORTHO05D004960 3.9e-93 345.9 247 67.2
arahy.Tifrunner.gnm1.ann1.VZ0ARL Arachis hypogaea HOM05D004358 ORTHO05D004960 8.7e-93 344.7 303 57.4
SHI24906 Sapria himalayana HOM05D004358 ORTHO05D004960 8.7e-93 344.7 307 57.0
Medtr2g098660 Medicago truncatula HOM05D004358 ORTHO05D004960 1.5e-92 344.0 312 57.1
Peaxi162Scf00058g01717 Petunia axillaris HOM05D004358 ORTHO05D004960 1.9e-92 343.6 321 55.5
Lj3g0017360 Lotus japonicus HOM05D004358 ORTHO05D004960 7.4e-92 341.7 238 66.4
Nitab4.5_0000941g0030 Nicotiana tabacum HOM05D004358 ORTHO05D004960 6.3e-91 338.6 333 54.4
CARHR005460 Cardamine hirsuta HOM05D004358 ORTHO05D004960 4.1e-90 335.9 186 82.8
SMO347G0587 Selaginella moellendorffii HOM05D004358 ORTHO05D004960 5.3e-90 335.5 241 65.6
Phvul.005G152500 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 3.4e-89 332.8 250 66.0
Nitab4.5_0003132g0140 Nicotiana tabacum HOM05D004358 ORTHO05D004960 4.5e-89 332.4 379 51.2
Mapoly0058s0068 Marchantia polymorpha HOM05D004358 ORTHO05D004960 2.1e-86 323.6 242 62.4
Nn1g09578 Nelumbo nucifera HOM05D004358 ORTHO05D004960 8.8e-85 318.2 207 70.5
Aqoxy7G00191 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 1.5e-84 317.4 320 52.2
arahy.Tifrunner.gnm1.ann1.98UW30 Arachis hypogaea HOM05D004358 ORTHO05D004960 1.5e-84 317.4 226 65.0
CBR_g29622 Chara braunii HOM05D004358 ORTHO05D004960 9.7e-84 314.7 247 61.9
Haze_01520 Corylus avellana HOM05D004358 ORTHO05D004960 6.3e-83 312.0 189 76.7
QL10p048514 Quercus lobata HOM05D004358 ORTHO05D004960 2.4e-82 310.1 185 77.8
Migut.M00111 Erythranthe guttata HOM05D004358 ORTHO05D004960 1.3e-80 304.3 269 59.9
Mapoly0058s0067 Marchantia polymorpha HOM05D004358 ORTHO05D004960 5.0e-80 302.4 246 59.8
ClCG07G015600 Citrullus lanatus HOM05D004358 ORTHO05D004960 2.7e-78 296.6 218 66.1
Eucgr.H00376 Eucalyptus grandis HOM05D004358 ORTHO05D004960 1.4e-74 284.3 171 75.4
DCAR_028143 Daucus carota HOM05D004358 ORTHO05D004960 2.6e-73 280.0 187 70.1
Solyc09g083003.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 1.0e-72 278.1 185 67.6
Psat1g007160 Pisum sativum HOM05D004358 ORTHO05D004960 8.5e-72 275.0 266 53.0
Gohir.A10G133700 Gossypium hirsutum HOM05D004358 ORTHO05D004960 1.0e-61 241.5 235 56.2
Haze_27447 Corylus avellana HOM05D004358 ORTHO05D004960 2.0e-60 237.3 229 52.0
SalBow7G1435 Salvia bowleyana HOM05D004358 ORTHO05D004960 1.2e-57 228.0 129 74.4
Pp3c17_17810 Physcomitrium patens HOM05D004358 ORTHO05D004960 2.9e-48 196.8 270 39.6
CAN.G80.26 Capsicum annuum HOM05D004358 ORTHO05D004960 1.9e-47 194.1 285 43.5
Cfa026201 Carpinus fangiana HOM05D004358 ORTHO05D004960 4.3e-47 193.0 232 44.0
Ca_18838_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 7.3e-47 192.2 114 74.6
PGSC0003DMG401026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 6.8e-45 185.7 107 77.6
AagrBONN_evm.TU.Sc2ySwM_368.679 Anthoceros agrestis HOM05D004358 ORTHO05D004960 1.0e-40 171.8 215 43.7
Glyma.12G053100 Glycine max HOM05D004358 ORTHO05D004960 3.9e-40 169.9 110 71.8
BcaC01g05951 Brassica carinata HOM05D004358 ORTHO05D004960 2.1e-38 164.1 188 55.9
BcaC07g42101 Brassica carinata HOM05D004358 ORTHO05D004960 6.2e-38 162.5 99 76.8
DCAR_028139 Daucus carota HOM05D004358 ORTHO05D004960 4.3e-31 139.8 75 78.7
Mapoly0058s0064 Marchantia polymorpha HOM05D004358 ORTHO05D004960 3.6e-30 136.7 104 61.5
PGSC0003DMG402026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 6.4e-27 125.9 171 48.5
Cpa.g.sc41.25 Carica papaya HOM05D004358 ORTHO05D004960 4.1e-26 123.2 75 77.3
SalBow1G3505 Salvia bowleyana HOM05D004358 ORTHO05D004960 7.1e-26 122.5 140 51.4
Cpa.g.sc41.31 Carica papaya HOM05D004358 ORTHO05D004960 6.0e-25 119.4 74 77.0
Lj3A203T17 Lonicera japonica HOM05D004358 ORTHO05D004960 7.8e-25 119.0 109 59.6
QL10p048520 Quercus lobata HOM05D004358 ORTHO05D004960 3.9e-24 116.7 288 33.3
Rhsim02G0076400 Rhododendron simsii HOM05D004358 ORTHO05D004960 3.2e-18 97.1 92 52.2
Glyma.15G030650 Glycine max HOM05D004358 ORTHO05D004960 3.5e-17 93.6 91 53.8
Haze_01519 Corylus avellana HOM05D004358 ORTHO05D004960 2.1e-14 84.3 236 31.4
Gohir.D08G144100 Gossypium hirsutum HOM05D004358 ORTHO05D004960 2.8e-14 84.0 83 53.0
Cre17.g732050 Chlamydomonas reinhardtii HOM05D004358 ORTHO05D004960 3.6e-14 83.6 190 30.0
PGSC0003DMG402006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 2.4e-13 80.9 47 70.2
Ca_29315_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 6.9e-13 79.3 152 32.2
PRCOL_00001550 Prasinoderma coloniale HOM05D004358 ORTHO05D004960 1.2e-12 78.6 164 29.3
Oeu007466.1 Olea europaea HOM05D004358 ORTHO05D004960 2.6e-12 77.4 129 41.9
Solyc09g083007.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 2.6e-12 77.4 132 40.2
MCO12G048 Micromonas commoda HOM05D006570 ORTHO05D008193 4.2e-10 70.1 239 27.6
CAN.G541.14 Capsicum annuum HOM05D004358 ORTHO05D004960 7.1e-10 69.3 95 44.2
Cre02.g082000 Chlamydomonas reinhardtii HOM05D006570 ORTHO05D008193 2.1e-09 67.8 219 24.7
Lj3C203G5 Lonicera japonica HOM05D009066 ORTHO05D004960 2.1e-09 67.8 37 78.4
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 2.1e-09 67.8 192 28.6
Ciclev10015195m.g Citrus clementina HOM05D006570 ORTHO05D008193 2.7e-09 67.4 154 30.5
Lsat_1_v5_gn_8_98640 Lactuca sativa HOM05D006570 ORTHO05D008193 2.3e-08 64.3 196 26.5
CAN.G1292.3 Capsicum annuum HOM05D004358 ORTHO05D004960 3.0e-08 63.9 59 52.5
Hma1.2p1_0834F.1_g225720 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 3.0e-08 63.9 193 27.5
Mapoly0043s0062 Marchantia polymorpha HOM05D006570 ORTHO05D008193 1.9e-07 61.2 160 29.4
ATR0743G076 Amborella trichopoda HOM05D006570 ORTHO05D008193 3.3e-07 60.5 159 30.2
Hma1.2p1_0834F.1_g225710 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 3.3e-07 60.5 148 29.7
PGR083G1749 Punica granatum HOM05D006570 ORTHO05D008193 3.3e-07 60.5 205 27.3
Peaxi162Scf12724g00014 Petunia axillaris HOM05D006570 ORTHO05D008193 7.3e-07 59.3 208 24.5
TAR362G0032 Trochodendron aralioides HOM05D006570 ORTHO05D008193 1.3e-06 58.5 154 27.9
Dinv28772 Davidia involucrata HOM05D006570 ORTHO05D008193 2.8e-06 57.4 194 28.4
AT4G12740 Arabidopsis thaliana HOM05D006570 ORTHO05D008193 4.8e-06 56.6 187 26.7
Hma1.2p1_1756F.1_g301050 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 6.2e-06 56.2 137 29.9
Ca_29093_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 8.1e-06 55.8 154 29.2
Thecc.04G185600 Theobroma cacao HOM05D004358 ORTHO05D004960 8.1e-06 55.8 31 77.4


User provided reference genes

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