Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 0.0e+00 1307.7 664 100.0
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 0.0e+00 1254.2 664 95.2
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 0.0e+00 1214.1 661 92.1
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 0.0e+00 1168.7 664 88.0
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 0.0e+00 1164.8 651 89.1
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 0.0e+00 1142.9 666 85.6
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 0.0e+00 1139.8 665 85.7
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 0.0e+00 1137.9 665 85.6
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 0.0e+00 1136.3 665 85.4
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 0.0e+00 1127.9 667 84.3
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 0.0e+00 1109.4 643 86.0
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 5.0e-277 957.6 664 71.2
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 2.6e-249 865.5 623 73.2
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 3.7e-248 861.7 674 62.9
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 4.6e-246 854.7 669 62.5
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 6.0e-246 854.4 578 76.6
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 6.6e-245 850.9 670 62.1
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 1.1e-244 850.1 671 62.4
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 4.3e-244 848.2 667 62.7
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 7.3e-244 847.4 675 61.8
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 9.5e-244 847.0 673 62.0
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 6.8e-242 840.9 675 60.9
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 8.9e-242 840.5 674 60.7
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 4.4e-241 838.2 673 61.4
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 1.4e-239 833.2 679 60.8
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 4.1e-239 831.6 672 60.4
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 1.0e-237 827.0 672 59.7
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 2.3e-237 825.9 672 60.6
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 3.0e-237 825.5 672 60.9
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 3.0e-237 825.5 672 59.7
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 3.9e-237 825.1 669 60.1
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 1.5e-236 823.2 673 60.3
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 2.5e-236 822.4 655 61.2
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 3.3e-236 822.0 672 58.8
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.1e-235 819.3 672 59.4
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 3.6e-235 818.5 674 59.9
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 3.6e-235 818.5 672 59.4
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 6.2e-235 817.8 655 61.4
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 8.1e-235 817.4 676 60.1
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.4e-234 816.6 675 59.4
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.8e-234 816.2 672 59.2
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 4.0e-234 815.1 671 59.3
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 5.2e-234 814.7 672 59.1
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 8.9e-234 813.9 730 56.2
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 1.2e-233 813.5 672 59.5
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 1.5e-233 813.1 684 58.6
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 2.0e-233 812.8 671 59.2
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 2.6e-233 812.4 671 59.9
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 7.6e-233 810.8 673 59.3
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 1.3e-232 810.1 671 59.3
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 1.7e-232 809.7 693 58.0
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 4.9e-232 808.1 668 59.4
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 6.4e-232 807.7 671 59.0
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 8.4e-232 807.4 674 59.2
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 3.2e-231 805.4 663 59.3
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 3.2e-231 805.4 673 58.7
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 3.2e-231 805.4 672 58.9
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 4.2e-231 805.1 699 56.7
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 7.1e-231 804.3 673 59.1
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 2.7e-230 802.4 673 58.8
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 7.8e-230 800.8 668 59.9
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 3.0e-229 798.9 667 59.4
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 1.5e-228 796.6 684 57.7
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.5e-228 796.6 671 58.1
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 3.3e-228 795.4 666 59.0
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 4.3e-228 795.0 671 58.4
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 5.6e-228 794.7 672 57.7
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 4.8e-227 791.6 672 57.7
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 6.9e-226 787.7 704 57.4
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 6.9e-226 787.7 668 58.4
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 1.2e-225 786.9 668 59.1
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 4.4e-225 785.0 655 58.8
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 7.6e-225 784.3 700 54.9
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 2.2e-224 782.7 673 58.2
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 3.8e-224 781.9 670 58.5
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.4e-223 780.0 673 57.2
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 3.2e-223 778.9 672 57.0
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 5.4e-223 778.1 668 57.8
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.2e-222 776.9 672 56.7
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 1.2e-222 776.9 672 56.7
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 2.7e-222 775.8 674 57.0
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 2.3e-221 772.7 666 57.4
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 8.7e-221 770.8 674 57.6
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 1.1e-220 770.4 673 57.5
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 7.3e-220 767.7 667 57.4
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 7.3e-220 767.7 666 57.2
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 2.4e-218 762.7 665 56.1
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 1.5e-217 760.0 673 56.3
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 4.5e-217 758.4 670 56.6
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 4.2e-215 751.9 698 55.7
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.3e-213 746.1 673 55.6
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 6.9e-210 734.6 660 56.2
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 6.7e-205 718.0 585 60.7
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 1.2e-201 707.2 698 53.2
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 5.5e-199 698.4 693 53.8
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 2.1e-198 696.4 664 52.7
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 2.7e-198 696.0 645 54.7
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 2.6e-193 679.5 606 57.4
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 3.1e-186 656.0 524 59.9
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 1.8e-181 640.2 668 50.6
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 4.2e-175 619.0 485 61.9
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 2.3e-173 613.2 686 48.8
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 9.7e-172 607.8 642 50.9
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 3.7e-171 605.9 694 46.8
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.8e-165 587.0 652 49.4
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 9.8e-164 581.3 563 52.9
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 1.6e-161 573.9 677 45.6
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 3.6e-158 562.8 445 59.6
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 4.4e-156 555.8 678 46.0
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 1.1e-154 551.2 466 57.5
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 5.9e-153 545.4 674 42.4
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 5.6e-151 538.9 460 58.3
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 4.9e-147 525.8 626 43.3
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 1.1e-146 524.6 678 42.9
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 4.3e-135 486.1 364 62.9
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 2.8e-134 483.4 499 49.9
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 8.1e-134 481.9 677 38.4
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 5.4e-106 389.4 470 42.1
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 7.6e-92 342.4 296 58.4
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 3.2e-74 283.9 202 64.9
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 5.3e-69 266.5 190 65.3
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.1e-66 258.8 324 45.7
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 1.5e-63 248.4 398 43.5
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 6.5e-51 206.5 198 51.5
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 4.8e-46 190.3 164 57.3
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 5.4e-45 186.8 340 36.2
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 3.8e-43 180.6 144 55.6
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 4.7e-41 173.7 507 28.8
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 1.3e-38 165.6 215 42.8
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 3.3e-34 151.0 105 69.5
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 4.3e-34 150.6 116 61.2
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 2.3e-32 144.8 192 44.8
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 3.4e-31 141.0 113 61.1
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.8e-29 135.2 200 40.5
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 1.7e-27 128.6 96 60.4
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 1.1e-26 125.9 80 75.0
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 1.5e-26 125.6 88 64.8
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.6e-25 122.1 82 69.5
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 1.4e-21 109.0 201 32.8
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 4.6e-20 104.0 72 69.4
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 1.0e-19 102.8 80 57.5
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 2.8e-17 94.7 156 40.4
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 2.3e-16 91.7 81 55.6
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 3.1e-16 91.3 96 54.2
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 6.8e-16 90.1 81 54.3
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 3.7e-14 84.3 73 58.9
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 1.4e-13 82.4 190 32.6
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 7.1e-13 80.1 168 31.5
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 1.2e-12 79.3 261 28.7
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 5.1e-11 73.9 132 36.4
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 2.5e-10 71.6 55 58.2
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 9.5e-10 69.7 186 29.0
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 2.1e-09 68.6 53 60.4
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.4e-08 65.9 66 51.5
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 5.8e-07 60.5 36 69.4
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 7.6e-07 60.1 161 27.3
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 2.2e-06 58.5 66 47.0
AagrBONN_evm.TU.Sc2ySwM_368.3370 Anthoceros agrestis HOM05D004484 ORTHO05D005370 8.4e-06 56.6 111 29.7


User provided reference genes

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