PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 34.13
Description: transport.peptides and oligopeptides

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_2	17	CH_aly_28	4	4	0.000000188706
Arabidopsis lyrata	scaffold_5	17	CH_aly_55	4	9	0.0000236325
Arabidopsis thaliana	1	17	CH_ath_389	3	4	0.000842965
Arabidopsis thaliana	1	17	CH_ath_111	5	5	0.000000000661732
Arabidopsis thaliana	3	17	CH_ath_69	7	9	0.0000000000000695633
Brassica rapa	A07	17	CH_bra_22	6	6	0.000000000040867
Brassica rapa	A07	18	CH_bra_38	10	234	0.000212729
Capsella rubella	scaffold_1	17	CH_cru_281	3	3	0.00045784
Capsella rubella	scaffold_5	17	CH_cru_85	5	5	0.00000000286101
Citrus sinensis	scaffold00009	17	CH_csi_173	4	7	0.000143206
Citrus sinensis	scaffold00070	17	CH_csi_107	4	4	0.00000412984
Eucalyptus grandis	scaffold_1	17	CH_egr_562	4	4	0.00000336341
Eucalyptus grandis	scaffold_11	17	CH_egr_688	4	6	0.0000502001
Eucalyptus grandis	scaffold_11	17	CH_egr_252	6	6	0.0000000000315665
Eucalyptus grandis	scaffold_8	17	CH_egr_423	5	6	0.0000000619596
Eucalyptus grandis	scaffold_9	17	CH_egr_561	4	4	0.00000336341
Glycine max	Gm05	17	CH_gma_185	5	7	0.000000320868
Glycine max	Gm11	17	CH_gma_166	5	6	0.0000000919113
Glycine max	Gm17	17	CH_gma_383	4	7	0.000174372
Glycine max	Gm18	17	CH_gma_259	4	4	0.0000050191
Gossypium raimondii	Chr09	17	CH_gra_351	3	3	0.000655727
Gossypium raimondii	Chr09	17	CH_gra_350	3	3	0.000655727
Malus domestica	11	17	CH_mdo_148	4	6	0.0000140419
Malus domestica	7	17	CH_mdo_56	5	6	0.0000000118167
Manihot esculenta	scaffold06005	17	CH_mes_129	4	5	0.00000940056
Manihot esculenta	scaffold09565	17	CH_mes_64	5	6	0.0000000334063
Oryza sativa ssp. japonica	1	17	CH_osa_22	9	10	4.70201e-19
Oryza sativa ssp. japonica	10	17	CH_osa_106	7	25	0.00000000520341
Oryza sativa ssp. japonica	4	17	CH_osa_402	3	3	0.000568919
Oryza sativa ssp. japonica	4	17	CH_osa_401	3	3	0.000568919
Oryza sativa ssp. japonica	5	17	CH_osa_311	4	8	0.0000843522
Oryza sativa ssp. japonica	6	17	CH_osa_101	5	5	0.00000000256587
Oryza sativa ssp. japonica	4	19	CH_osa_17	3	3	0.000164409
Populus trichocarpa	Chr13	17	CH_ptr_84	7	8	0.000000000000549027
Populus trichocarpa	Chr17	17	CH_ptr_85	8	14	0.000000000000569765
Populus trichocarpa	Chr18	17	CH_ptr_25	12	16	1.94723e-23
Populus trichocarpa	Chr17	18	CH_ptr_73	10	74	0.000000000899113
Populus trichocarpa	Chr18	18	CH_ptr_24	12	16	1.94723e-23
Prunus persica	scaffold_1	17	CH_ppe_271	5	13	0.00000742596
Prunus persica	scaffold_1	17	CH_ppe_194	5	7	0.000000122913
Prunus persica	scaffold_2	17	CH_ppe_331	4	7	0.000071781
Prunus persica	scaffold_5	17	CH_ppe_399	4	10	0.000427703
Prunus persica	scaffold_6	17	CH_ppe_207	6	18	0.000000298189
Ricinus communis	29629	17	CH_rco_265	3	3	0.000724928
Ricinus communis	29637	17	CH_rco_264	3	3	0.000724928
Ricinus communis	29794	17	CH_rco_263	3	3	0.000724928
Ricinus communis	29822	17	CH_rco_47	6	7	0.000000000157066
Solanum lycopersicum	ch03	17	CH_sly_294	4	5	0.0000219318
Solanum lycopersicum	ch05	17	CH_sly_20	10	11	5.28643e-20
Solanum lycopersicum	ch06	17	CH_sly_97	6	7	0.000000000328004
Solanum lycopersicum	ch12	17	CH_sly_54	7	7	0.000000000000151569
Solanum lycopersicum	ch05	18	CH_sly_19	10	11	5.28643e-20
Vitis vinifera	chr1	17	CH_vvi_425	3	3	0.000686303
Vitis vinifera	chr17	17	CH_vvi_387	4	10	0.00041084
Vitis vinifera	chr18	17	CH_vvi_27	11	13	1.77564e-22
Vitis vinifera	chr18	17	CH_vvi_426	3	3	0.000686303
Vitis vinifera	chr19	17	CH_vvi_154	5	6	0.0000000338746
Vitis vinifera	chr18	18	CH_vvi_29	11	13	1.77564e-22
Zea mays	1	17	CH_zma_53	5	5	0.00000000736466
Zea mays	10	17	CH_zma_293	3	3	0.000936752
Zea mays	3	17	CH_zma_292	3	3	0.000936752
Zea mays	6	17	CH_zma_54	5	5	0.00000000736466

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V