PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 30.2.17
Description: signalling.receptor kinases.DUF 26

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_7	17	CH_aly_14	7	19	0.00000000143043
Arabidopsis lyrata	scaffold_7	18	CH_aly_9	10	260	0.0000842495
Arabidopsis thaliana	4	17	CH_ath_61	7	9	0.0000000000000168305
Arabidopsis thaliana	4	17	CH_ath_178	5	13	0.000000311904
Arabidopsis thaliana	4	17	CH_ath_4	20	23	5.42933e-51
Arabidopsis thaliana	4	18	CH_ath_10	20	23	5.42933e-51
Brassica rapa	A01	17	CH_bra_7	14	29	1.74457e-18
Brassica rapa	A02	17	CH_bra_156	5	7	0.0000146725
Brassica rapa	A03	17	CH_bra_1	13	17	8.45389e-21
Brassica rapa	A03	17	CH_bra_97	5	5	0.000000706935
Brassica rapa	A06	17	CH_bra_33	8	14	0.000000000691032
Brassica rapa	A07	17	CH_bra_155	6	14	0.0000141413
Brassica rapa	A01	18	CH_bra_7	14	29	1.74457e-18
Brassica rapa	A03	18	CH_bra_1	13	17	8.45389e-21
Brassica rapa	A03	18	CH_bra_33	11	123	0.0000594068
Brassica rapa	A09	18	CH_bra_35	12	163	0.0000996938
Capsella rubella	scaffold_1	17	CH_cru_113	6	7	0.000000024473
Capsella rubella	scaffold_2	17	CH_cru_25	11	16	2.40888e-16
Capsella rubella	scaffold_5	17	CH_cru_51	8	10	0.00000000000766906
Capsella rubella	scaffold_6	17	CH_cru_32	10	13	0.00000000000000232465
Capsella rubella	scaffold_6	17	CH_cru_22	11	15	7.57549e-17
Capsella rubella	scaffold_7	17	CH_cru_1	28	29	1.1635e-55
Capsella rubella	scaffold_7	17	CH_cru_149	5	5	0.000000498146
Capsella rubella	scaffold_2	18	CH_cru_16	11	16	2.40888e-16
Capsella rubella	scaffold_6	18	CH_cru_11	25	195	1.33305e-19
Capsella rubella	scaffold_7	18	CH_cru_1	28	29	1.1635e-55
Citrus sinensis	scaffold00008	17	CH_csi_56	6	6	0.0000000219498
Citrus sinensis	scaffold00010	17	CH_csi_11	15	40	6.93903e-16
Citrus sinensis	scaffold00012	17	CH_csi_1	30	45	2.18235e-45
Citrus sinensis	scaffold00101	17	CH_csi_9	13	18	1.85467e-18
Citrus sinensis	scaffold00010	18	CH_csi_7	15	40	6.93903e-16
Citrus sinensis	scaffold00101	18	CH_csi_6	13	18	1.85467e-18
Eucalyptus grandis	scaffold_1	17	CH_egr_731	7	12	0.00016419
Eucalyptus grandis	scaffold_11	17	CH_egr_381	10	15	0.00000000997469
Eucalyptus grandis	scaffold_11	17	CH_egr_142	16	23	1.94208e-16
Eucalyptus grandis	scaffold_11	17	CH_egr_217	20	60	0.000000000000583928
Eucalyptus grandis	scaffold_11	17	CH_egr_103	20	33	1.52689e-19
Eucalyptus grandis	scaffold_2	17	CH_egr_799	5	5	0.000361775
Eucalyptus grandis	scaffold_2	17	CH_egr_27	26	32	6.6884e-32
Eucalyptus grandis	scaffold_2	17	CH_egr_512	9	15	0.000000645006
Eucalyptus grandis	scaffold_3	17	CH_egr_20	27	33	2.02149e-33
Eucalyptus grandis	scaffold_3	17	CH_egr_321	10	13	0.000000000995047
Eucalyptus grandis	scaffold_4	17	CH_egr_16	27	32	3.76523e-34
Eucalyptus grandis	scaffold_4	17	CH_egr_39	30	56	1.12415e-28
Eucalyptus grandis	scaffold_5	17	CH_egr_15	30	42	2.62237e-34
Eucalyptus grandis	scaffold_5	17	CH_egr_5	30	30	3.16823e-44
Eucalyptus grandis	scaffold_5	17	CH_egr_7	30	34	1.33406e-39
Eucalyptus grandis	scaffold_5	17	CH_egr_10	30	37	2.75472e-37
Eucalyptus grandis	scaffold_5	17	CH_egr_181	12	13	0.0000000000000300113
Eucalyptus grandis	scaffold_6	17	CH_egr_608	6	6	0.00000916369
Eucalyptus grandis	scaffold_6	17	CH_egr_60	24	41	1.39861e-23
Eucalyptus grandis	scaffold_6	17	CH_egr_322	10	13	0.000000000995047
Eucalyptus grandis	scaffold_6	17	CH_egr_603	7	9	0.00000798121
Eucalyptus grandis	scaffold_6	17	CH_egr_371	8	8	0.00000000585954
Eucalyptus grandis	scaffold_7	17	CH_egr_439	16	62	0.0000000855276
Eucalyptus grandis	scaffold_8	17	CH_egr_260	10	11	0.0000000000400876
Eucalyptus grandis	scaffold_8	17	CH_egr_134	20	41	5.91608e-17
Eucalyptus grandis	scaffold_8	17	CH_egr_800	5	5	0.000361775
Eucalyptus grandis	scaffold_1	18	CH_egr_137	13	17	0.000000000000128617
Eucalyptus grandis	scaffold_11	18	CH_egr_146	20	60	0.000000000000583928
Eucalyptus grandis	scaffold_11	18	CH_egr_41	44	155	6.07083e-29
Eucalyptus grandis	scaffold_11	18	CH_egr_188	10	15	0.00000000997469
Eucalyptus grandis	scaffold_2	18	CH_egr_30	26	32	6.6884e-32
Eucalyptus grandis	scaffold_3	18	CH_egr_177	10	13	0.000000000995047
Eucalyptus grandis	scaffold_4	18	CH_egr_5	57	119	7.67273e-54
Eucalyptus grandis	scaffold_5	18	CH_egr_11	34	46	3.3647e-40
Eucalyptus grandis	scaffold_5	18	CH_egr_4	44	49	1.44419e-60
Eucalyptus grandis	scaffold_5	18	CH_egr_2	74	144	4.60646e-74
Eucalyptus grandis	scaffold_5	18	CH_egr_127	12	13	0.0000000000000300113
Eucalyptus grandis	scaffold_6	18	CH_egr_57	24	41	1.39861e-23
Eucalyptus grandis	scaffold_6	18	CH_egr_178	10	13	0.000000000995047
Eucalyptus grandis	scaffold_8	18	CH_egr_108	20	41	5.91608e-17
Eucalyptus grandis	scaffold_8	18	CH_egr_156	10	11	0.0000000000400876
Glycine max	Gm03	17	CH_gma_316	5	6	0.0000341399
Glycine max	Gm06	17	CH_gma_7	30	64	4.61877e-38
Glycine max	Gm08	17	CH_gma_466	4	4	0.000568804
Glycine max	Gm09	17	CH_gma_467	4	4	0.000568804
Glycine max	Gm10	17	CH_gma_21	13	14	7.99489e-21
Glycine max	Gm11	17	CH_gma_20	17	32	2.71681e-21
Glycine max	Gm12	17	CH_gma_412	5	8	0.000313304
Glycine max	Gm12	17	CH_gma_55	13	29	0.0000000000000337219
Glycine max	Gm13	17	CH_gma_18	16	25	1.05184e-21
Glycine max	Gm13	17	CH_gma_315	5	6	0.0000341399
Glycine max	Gm13	17	CH_gma_67	9	11	0.00000000000315223
Glycine max	Gm13	17	CH_gma_170	7	11	0.000000185014
Glycine max	Gm14	17	CH_gma_371	5	7	0.000118485
Glycine max	Gm15	17	CH_gma_83	8	9	0.0000000000519791
Glycine max	Gm15	17	CH_gma_372	5	7	0.000118485
Glycine max	Gm16	17	CH_gma_333	6	12	0.0000506862
Glycine max	Gm17	17	CH_gma_262	5	5	0.00000573825
Glycine max	Gm17	17	CH_gma_56	9	9	0.0000000000000583608
Glycine max	Gm18	17	CH_gma_157	6	6	0.0000000577837
Glycine max	Gm20	17	CH_gma_119	7	8	0.00000000460565
Glycine max	Gm20	17	CH_gma_3	30	33	2.07913e-52
Glycine max	Gm06	18	CH_gma_8	35	76	1.17356e-44
Glycine max	Gm08	18	CH_gma_58	11	57	0.000000704099
Glycine max	Gm10	18	CH_gma_21	13	14	7.99489e-21
Glycine max	Gm11	18	CH_gma_20	17	32	2.71681e-21
Glycine max	Gm12	18	CH_gma_30	19	89	0.0000000000000116745
Glycine max	Gm13	18	CH_gma_49	10	33	0.0000000437772
Glycine max	Gm13	18	CH_gma_18	16	25	1.05184e-21
Glycine max	Gm15	18	CH_gma_80	10	79	0.000448213
Glycine max	Gm17	18	CH_gma_47	15	105	0.0000000136265
Glycine max	Gm20	18	CH_gma_4	32	35	2.29944e-56
Gossypium raimondii	Chr02	17	CH_gra_62	17	80	0.0000000000000464158
Gossypium raimondii	Chr02	17	CH_gra_129	7	11	0.0000000527794
Gossypium raimondii	Chr05	17	CH_gra_188	5	5	0.00000211425
Gossypium raimondii	Chr06	17	CH_gra_144	7	13	0.000000270233
Gossypium raimondii	Chr10	17	CH_gra_22	17	32	1.99145e-22
Gossypium raimondii	Chr11	17	CH_gra_157	6	8	0.000000515801
Gossypium raimondii	Chr11	17	CH_gra_85	8	9	0.0000000000129542
Gossypium raimondii	Chr12	17	CH_gra_54	11	16	0.00000000000000406476
Gossypium raimondii	Chr10	18	CH_gra_22	17	32	1.99145e-22
Gossypium raimondii	Chr11	18	CH_gra_52	10	30	0.00000000284739
Gossypium raimondii	Chr12	18	CH_gra_41	11	16	0.00000000000000406476
Malus domestica	10	17	CH_mdo_15	15	78	0.00000000000317472
Malus domestica	11	17	CH_mdo_218	5	9	0.000170173
Malus domestica	12	17	CH_mdo_188	5	8	0.0000761348
Malus domestica	16	17	CH_mdo_169	5	7	0.0000287402
Malus domestica	2	17	CH_mdo_220	4	4	0.000175177
Malus domestica	5	17	CH_mdo_52	12	66	0.0000000083208
Malus domestica	5	17	CH_mdo_9	16	58	5.16372e-16
Malus domestica	5	17	CH_mdo_238	6	19	0.000271938
Malus domestica	10	18	CH_mdo_8	16	81	0.000000000000189907
Malus domestica	5	18	CH_mdo_13	12	66	0.0000000083208
Malus domestica	5	18	CH_mdo_4	21	102	3.99849e-19
Manihot esculenta	scaffold02801	17	CH_mes_162	4	4	0.000098723
Manihot esculenta	scaffold03741	17	CH_mes_47	6	6	0.00000000654845
Manihot esculenta	scaffold03818	17	CH_mes_163	4	4	0.000098723
Manihot esculenta	scaffold04324	17	CH_mes_106	8	31	0.00000283897
Manihot esculenta	scaffold05116	17	CH_mes_10	15	31	2.05991e-19
Manihot esculenta	scaffold12753	17	CH_mes_2	18	19	6.37111e-33
Manihot esculenta	scaffold05116	18	CH_mes_6	15	31	2.05991e-19
Manihot esculenta	scaffold12753	18	CH_mes_2	18	19	6.37111e-33
Oryza sativa ssp. japonica	12	17	CH_osa_306	11	46	0.0000658372
Oryza sativa ssp. japonica	12	18	CH_osa_67	27	277	0.000000752298
Oryza sativa ssp. japonica	12	19	CH_osa_12	11	46	0.0000610192
Oryza sativa ssp. japonica	12	20	CH_osa_13	27	277	0.000000638249
Populus trichocarpa	Chr01	17	CH_ptr_103	10	14	0.0000000000129793
Populus trichocarpa	Chr01	17	CH_ptr_302	6	8	0.00000928076
Populus trichocarpa	Chr01	17	CH_ptr_17	23	37	5.2417e-29
Populus trichocarpa	Chr03	17	CH_ptr_187	7	8	0.0000000380996
Populus trichocarpa	Chr04	17	CH_ptr_369	5	6	0.000141615
Populus trichocarpa	Chr04	17	CH_ptr_7	30	46	7.52319e-40
Populus trichocarpa	Chr05	17	CH_ptr_319	5	5	0.0000238862
Populus trichocarpa	Chr07	17	CH_ptr_132	9	13	0.000000000656748
Populus trichocarpa	Chr11	17	CH_ptr_5	30	43	2.88816e-41
Populus trichocarpa	Chr11	17	CH_ptr_9	27	34	1.8068e-39
Populus trichocarpa	Chr12	17	CH_ptr_113	8	9	0.0000000000683416
Populus trichocarpa	Chr15	17	CH_ptr_441	5	7	0.000489769
Populus trichocarpa	Chr17	17	CH_ptr_27	24	66	5.08586e-23
Populus trichocarpa	Chr19	17	CH_ptr_273	7	12	0.00000358793
Populus trichocarpa	scaffold_29	17	CH_ptr_11	24	29	1.5831e-35
Populus trichocarpa	Chr01	18	CH_ptr_15	23	37	5.2417e-29
Populus trichocarpa	Chr04	18	CH_ptr_5	34	53	2.94362e-45
Populus trichocarpa	Chr11	18	CH_ptr_98	10	45	0.0000277282
Populus trichocarpa	Chr17	18	CH_ptr_26	24	66	5.08586e-23
Populus trichocarpa	scaffold_29	18	CH_ptr_9	24	29	1.5831e-35
Prunus persica	scaffold_1	17	CH_ppe_177	12	64	0.0000000462059
Prunus persica	scaffold_3	17	CH_ppe_13	19	27	3.19097e-28
Prunus persica	scaffold_4	17	CH_ppe_135	7	8	0.00000000206881
Prunus persica	scaffold_4	17	CH_ppe_6	29	60	5.72245e-38
Prunus persica	scaffold_4	17	CH_ppe_34	15	28	6.50553e-19
Prunus persica	scaffold_4	17	CH_ppe_82	16	76	0.000000000001161
Prunus persica	scaffold_6	17	CH_ppe_222	7	14	0.000000842792
Prunus persica	scaffold_6	17	CH_ppe_425	6	19	0.000646517
Prunus persica	scaffold_1	18	CH_ppe_72	12	64	0.0000000462059
Prunus persica	scaffold_3	18	CH_ppe_14	19	27	3.19097e-28
Prunus persica	scaffold_4	18	CH_ppe_6	29	60	5.72245e-38
Prunus persica	scaffold_4	18	CH_ppe_30	15	28	6.50553e-19
Ricinus communis	29804	17	CH_rco_230	6	21	0.000433494
Ricinus communis	29842	17	CH_rco_5	21	57	7.41503e-25
Ricinus communis	30026	17	CH_rco_118	5	5	0.00000103861
Ricinus communis	30146	17	CH_rco_255	4	5	0.000596674
Ricinus communis	30169	17	CH_rco_23	9	11	0.000000000000296553
Ricinus communis	30170	17	CH_rco_43	7	7	0.000000000076274
Ricinus communis	29842	18	CH_rco_5	21	57	7.41503e-25
Ricinus communis	30169	18	CH_rco_20	10	61	0.00000280488
Solanum lycopersicum	ch01	17	CH_sly_380	4	4	0.000177197
Solanum lycopersicum	ch02	17	CH_sly_307	5	7	0.0000307501
Solanum lycopersicum	ch02	17	CH_sly_4	25	57	1.62446e-32
Solanum lycopersicum	ch03	17	CH_sly_340	5	8	0.0000814275
Solanum lycopersicum	ch04	17	CH_sly_48	10	13	0.0000000000000163028
Solanum lycopersicum	ch07	17	CH_sly_96	10	26	0.000000000274595
Solanum lycopersicum	ch07	17	CH_sly_49	10	13	0.0000000000000163028
Solanum lycopersicum	ch02	18	CH_sly_4	25	57	1.62446e-32
Solanum lycopersicum	ch04	18	CH_sly_40	10	13	0.0000000000000163028
Solanum lycopersicum	ch07	18	CH_sly_52	10	26	0.000000000274595
Solanum lycopersicum	ch07	18	CH_sly_41	10	13	0.0000000000000163028
Vitis vinifera	chr10	17	CH_vvi_197	7	12	0.000000510599
Vitis vinifera	chr12	17	CH_vvi_121	8	11	0.00000000122556
Vitis vinifera	chr12	17	CH_vvi_85	9	10	0.000000000000853356
Vitis vinifera	chr18	17	CH_vvi_57	10	10	9.67505e-16
Vitis vinifera	chr19	17	CH_vvi_4	30	44	4.71071e-44
Vitis vinifera	chr6	17	CH_vvi_401	4	4	0.000460648
Vitis vinifera	chr8	17	CH_vvi_166	6	6	0.0000000597811
Vitis vinifera	chrUn	17	CH_vvi_255	7	16	0.00000708712
Vitis vinifera	chrUn	17	CH_vvi_299	11	79	0.0000485577
Vitis vinifera	chrUn	17	CH_vvi_216	6	8	0.00000164138
Vitis vinifera	chrUn	17	CH_vvi_302	11	80	0.000055723
Vitis vinifera	chr18	18	CH_vvi_41	10	10	9.67505e-16
Vitis vinifera	chr19	18	CH_vvi_3	36	57	9.96584e-52
Vitis vinifera	chrUn	18	CH_vvi_90	14	132	0.0000119341
Vitis vinifera	chrUn	18	CH_vvi_111	17	272	0.0005722
Vitis vinifera	chrUn	18	CH_vvi_53	26	290	0.0000000000208147
Zea mays	2	17	CH_zma_15	11	26	0.000000000000137211
Zea mays	7	17	CH_zma_8	16	55	3.47709e-18
Zea mays	8	17	CH_zma_5	15	23	1.15256e-23
Zea mays	2	18	CH_zma_11	11	26	0.000000000000137211
Zea mays	7	18	CH_zma_7	16	55	3.47709e-18
Zea mays	8	18	CH_zma_4	15	23	1.15256e-23

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V