PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 27.3.41
Description: RNA.regulation of transcription.B3 transcription factor family

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_7	17	CH_aly_31	4	6	0.000000406714
Arabidopsis thaliana	2	17	CH_ath_121	6	18	0.00000000217693
Arabidopsis thaliana	4	17	CH_ath_21	9	10	1.58266e-21
Arabidopsis thaliana	5	17	CH_ath_300	3	3	0.0000703806
Arabidopsis thaliana	4	18	CH_ath_48	10	195	0.00000000239779
Brassica rapa	A01	17	CH_bra_38	5	5	0.0000000015992
Brassica rapa	A04	17	CH_bra_19	6	6	0.00000000000322195
Brassica rapa	A09	17	CH_bra_243	3	3	0.000379824
Capsella rubella	scaffold_4	17	CH_cru_124	6	25	0.0000000453913
Capsella rubella	scaffold_7	17	CH_cru_21	8	11	7.47296e-17
Capsella rubella	scaffold_8	17	CH_cru_276	3	4	0.000372186
Capsella rubella	scaffold_7	18	CH_cru_41	10	291	0.00000052412
Citrus sinensis	scaffold00109	17	CH_csi_133	3	3	0.0000233168
Citrus sinensis	scaffold00167	17	CH_csi_5	9	13	5.87794e-21
Eucalyptus grandis	scaffold_4	17	CH_egr_627	3	3	0.0000134052
Eucalyptus grandis	scaffold_7	17	CH_egr_766	3	6	0.000267673
Eucalyptus grandis	scaffold_9	17	CH_egr_510	4	8	0.000000631311
Eucalyptus grandis	scaffold_9	19	CH_egr_5	3	8	0.000161432
Glycine max	Gm11	17	CH_gma_282	3	3	0.000011257
Gossypium raimondii	Chr03	17	CH_gra_179	4	9	0.00000137956
Gossypium raimondii	Chr08	17	CH_gra_274	3	5	0.000157361
Gossypium raimondii	Chr13	17	CH_gra_256	3	4	0.0000629789
Malus domestica	2	17	CH_mdo_177	3	7	0.000040682
Manihot esculenta	scaffold03235	17	CH_mes_63	4	4	0.0000000330795
Manihot esculenta	scaffold06705	17	CH_mes_175	4	21	0.000195138
Manihot esculenta	scaffold08265	17	CH_mes_45	6	25	0.00000000552691
Manihot esculenta	scaffold11584	17	CH_mes_62	4	4	0.0000000330795
Oryza sativa ssp. japonica	12	17	CH_osa_210	3	5	0.00000231185
Oryza sativa ssp. japonica	3	17	CH_osa_131	4	14	0.0000000290075
Populus trichocarpa	Chr04	17	CH_ptr_157	4	4	0.00000000560037
Populus trichocarpa	Chr09	17	CH_ptr_158	4	4	0.00000000560037
Prunus persica	scaffold_7	17	CH_ppe_84	6	10	0.00000000000271582
Prunus persica	scaffold_8	17	CH_ppe_163	4	4	0.0000000197234
Ricinus communis	29851	17	CH_rco_216	3	8	0.000294186
Ricinus communis	30170	17	CH_rco_65	4	4	0.00000000284399
Ricinus communis	30170	19	CH_rco_1	3	3	0.00000081004
Solanum lycopersicum	ch01	17	CH_sly_300	3	3	0.0000271459
Solanum lycopersicum	ch08	17	CH_sly_26	8	10	4.13298e-19
Vitis vinifera	chr3	17	CH_vvi_148	6	77	0.0000000228787
Zea mays	1	17	CH_zma_27	5	7	0.0000000000117101

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V