PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 26.12
Description: misc.peroxidases

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_6	17	CH_aly_69	3	3	0.0000848514
Arabidopsis thaliana	5	17	CH_ath_359	3	3	0.000344485
Brassica rapa	A06	17	CH_bra_296	3	3	0.000916362
Brassica rapa	A09	17	CH_bra_119	4	4	0.00000255267
Brassica rapa	A10	17	CH_bra_297	3	3	0.000916362
Brassica rapa	A10	17	CH_bra_298	3	3	0.000916362
Capsella rubella	scaffold_5	17	CH_cru_115	5	6	0.0000000321696
Capsella rubella	scaffold_7	17	CH_cru_162	4	4	0.00000190286
Capsella rubella	scaffold_7	17	CH_cru_220	4	6	0.0000284119
Capsella rubella	scaffold_8	17	CH_cru_306	3	3	0.000664784
Citrus sinensis	scaffold00043	17	CH_csi_57	5	6	0.0000000290402
Citrus sinensis	scaffold00248	17	CH_csi_221	3	3	0.000536592
Eucalyptus grandis	scaffold_1	17	CH_egr_241	6	6	0.00000000000905842
Eucalyptus grandis	scaffold_1	17	CH_egr_821	3	3	0.000585517
Eucalyptus grandis	scaffold_1	17	CH_egr_535	4	4	0.00000147615
Eucalyptus grandis	scaffold_1	17	CH_egr_822	3	3	0.000585517
Eucalyptus grandis	scaffold_10	17	CH_egr_242	6	6	0.00000000000905842
Eucalyptus grandis	scaffold_11	17	CH_egr_823	3	3	0.000585517
Eucalyptus grandis	scaffold_8	17	CH_egr_354	5	5	0.00000000367837
Eucalyptus grandis	scaffold_8	17	CH_egr_536	4	4	0.00000147615
Glycine max	Gm02	17	CH_gma_320	4	5	0.0000368423
Glycine max	Gm03	17	CH_gma_34	10	15	2.97384e-17
Glycine max	Gm09	17	CH_gma_65	7	8	0.00000000000222883
Glycine max	Gm15	17	CH_gma_86	6	6	0.0000000000837053
Glycine max	Gm18	17	CH_gma_269	4	4	0.00000738855
Glycine max	Gm03	18	CH_gma_25	10	15	2.97384e-17
Gossypium raimondii	Chr04	17	CH_gra_347	3	3	0.000655727
Gossypium raimondii	Chr06	17	CH_gra_212	4	5	0.00000833246
Gossypium raimondii	Chr08	17	CH_gra_348	3	3	0.000655727
Gossypium raimondii	Chr13	17	CH_gra_346	3	3	0.000655727
Gossypium raimondii	scaffold_14	17	CH_gra_349	3	3	0.000655727
Malus domestica	17	17	CH_mdo_265	3	3	0.000338758
Malus domestica	3	17	CH_mdo_27	6	8	0.0000000000664599
Manihot esculenta	scaffold01551	17	CH_mes_254	3	3	0.0009242
Manihot esculenta	scaffold06814	17	CH_mes_51	5	5	0.0000000107793
Manihot esculenta	scaffold07035	17	CH_mes_109	4	4	0.00000317837
Manihot esculenta	scaffold08799	17	CH_mes_30	6	6	0.0000000000360443
Manihot esculenta	scaffold10173	17	CH_mes_108	4	4	0.00000317837
Manihot esculenta	scaffold11998	17	CH_mes_255	3	3	0.0009242
Oryza sativa ssp. japonica	1	17	CH_osa_292	4	6	0.0000364561
Oryza sativa ssp. japonica	1	17	CH_osa_200	5	10	0.00000153769
Oryza sativa ssp. japonica	1	17	CH_osa_138	6	14	0.0000000456706
Oryza sativa ssp. japonica	2	17	CH_osa_242	6	29	0.00000699451
Oryza sativa ssp. japonica	3	17	CH_osa_68	7	13	0.000000000065284
Oryza sativa ssp. japonica	4	17	CH_osa_125	6	12	0.0000000141132
Oryza sativa ssp. japonica	5	17	CH_osa_69	7	13	0.000000000065284
Oryza sativa ssp. japonica	6	17	CH_osa_144	6	15	0.0000000759538
Oryza sativa ssp. japonica	6	17	CH_osa_212	4	4	0.00000244035
Oryza sativa ssp. japonica	7	17	CH_osa_133	5	6	0.0000000369222
Oryza sativa ssp. japonica	7	17	CH_osa_229	5	12	0.00000481239
Oryza sativa ssp. japonica	7	17	CH_osa_48	7	8	0.000000000000307697
Oryza sativa ssp. japonica	1	18	CH_osa_87	11	275	0.0000106867
Physcomitrella patens	scaffold_256	17	CH_ppa_51	4	16	0.000539801
Populus trichocarpa	Chr01	17	CH_ptr_154	7	22	0.00000000430843
Populus trichocarpa	Chr03	17	CH_ptr_102	6	6	0.0000000000106518
Populus trichocarpa	Chr07	17	CH_ptr_251	4	4	0.00000172249
Populus trichocarpa	Chr16	17	CH_ptr_468	3	3	0.000682395
Populus trichocarpa	Chr17	17	CH_ptr_469	3	3	0.000682395
Prunus persica	scaffold_6	17	CH_ppe_100	6	7	0.0000000000438304
Prunus persica	scaffold_6	17	CH_ppe_38	9	11	4.21997e-18
Prunus persica	scaffold_6	17	CH_ppe_413	3	3	0.000445504
Ricinus communis	27446	17	CH_rco_259	3	3	0.00060267
Ricinus communis	29726	17	CH_rco_258	3	3	0.00060267
Ricinus communis	29780	17	CH_rco_84	7	25	0.0000000201719
Ricinus communis	30156	17	CH_rco_257	3	3	0.00060267
Ricinus communis	30190	17	CH_rco_13	8	9	0.00000000000000110323
Solanum lycopersicum	ch01	17	CH_sly_237	4	4	0.00000330874
Solanum lycopersicum	ch05	17	CH_sly_236	4	4	0.00000330874
Solanum lycopersicum	ch07	17	CH_sly_286	4	5	0.0000165028
Solanum lycopersicum	ch10	17	CH_sly_159	5	6	0.0000000604479
Vitis vinifera	chr1	17	CH_vvi_61	8	10	0.00000000000000437633
Vitis vinifera	chr12	17	CH_vvi_105	6	7	0.0000000000948876
Vitis vinifera	chr18	17	CH_vvi_217	4	4	0.0000017868
Vitis vinifera	chr1	18	CH_vvi_57	10	77	0.000000000621441
Zea mays	1	17	CH_zma_161	4	5	0.0000317794
Zea mays	10	17	CH_zma_4	13	18	3.21957e-24
Zea mays	2	17	CH_zma_58	5	5	0.0000000222801
Zea mays	5	17	CH_zma_163	4	5	0.0000317794
Zea mays	5	17	CH_zma_209	4	7	0.000221203
Zea mays	7	17	CH_zma_162	4	5	0.0000317794
Zea mays	7	17	CH_zma_9	9	10	3.08435e-17
Zea mays	10	18	CH_zma_3	13	18	3.21957e-24
Zea mays	7	18	CH_zma_19	13	158	0.000000000904437

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V