PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 26
Description: misc

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_4	18	CH_aly_3	13	27	0.0000000522061
Arabidopsis thaliana	3	17	CH_ath_239	19	68	0.00000727789
Arabidopsis thaliana	2	18	CH_ath_92	14	47	0.000696299
Arabidopsis thaliana	3	18	CH_ath_68	19	68	0.00000727789
Arabidopsis thaliana	4	18	CH_ath_72	13	29	0.0000106533
Arabidopsis thaliana	5	18	CH_ath_63	10	13	0.000000458714
Brassica rapa	A06	17	CH_bra_193	9	12	0.0000785054
Brassica rapa	A06	17	CH_bra_264	9	14	0.000639256
Brassica rapa	A04	18	CH_bra_21	13	19	0.000000105898
Brassica rapa	A10	18	CH_bra_42	10	18	0.000708289
Capsella rubella	scaffold_5	17	CH_cru_190	10	13	0.00000700006
Capsella rubella	scaffold_2	18	CH_cru_42	12	17	0.000000541182
Capsella rubella	scaffold_3	18	CH_cru_57	10	15	0.0000652552
Capsella rubella	scaffold_4	18	CH_cru_30	10	10	0.0000000292648
Capsella rubella	scaffold_5	18	CH_cru_46	10	13	0.00000700006
Capsella rubella	scaffold_7	18	CH_cru_60	12	24	0.000155064
Capsella rubella	scaffold_7	18	CH_cru_47	14	28	0.00000815091
Capsella rubella	scaffold_8	18	CH_cru_28	14	17	0.000000000270171
Citrus sinensis	scaffold00031	18	CH_csi_16	15	27	0.000000134208
Citrus sinensis	scaffold00033	18	CH_csi_18	13	24	0.00000528047
Eucalyptus grandis	scaffold_6	17	CH_egr_278	23	45	0.000000000142739
Eucalyptus grandis	scaffold_8	17	CH_egr_553	17	36	0.00000280533
Eucalyptus grandis	scaffold_11	18	CH_egr_231	12	18	0.00000801721
Eucalyptus grandis	scaffold_2	18	CH_egr_196	12	14	0.000000051674
Eucalyptus grandis	scaffold_4	18	CH_egr_256	14	29	0.0000921105
Eucalyptus grandis	scaffold_4	18	CH_egr_269	17	47	0.000415691
Eucalyptus grandis	scaffold_6	18	CH_egr_163	23	45	0.000000000142739
Eucalyptus grandis	scaffold_7	18	CH_egr_246	11	16	0.0000282188
Eucalyptus grandis	scaffold_8	18	CH_egr_223	17	36	0.00000280533
Eucalyptus grandis	scaffold_8	18	CH_egr_248	10	13	0.0000295379
Eucalyptus grandis	scaffold_9	18	CH_egr_170	12	12	0.000000000651245
Glycine max	Gm09	17	CH_gma_233	23	79	0.00000167522
Glycine max	Gm02	18	CH_gma_60	10	12	0.00000091607
Glycine max	Gm05	18	CH_gma_81	12	28	0.000624008
Glycine max	Gm07	18	CH_gma_83	10	19	0.000892614
Glycine max	Gm09	18	CH_gma_64	23	79	0.00000167522
Glycine max	Gm15	18	CH_gma_50	13	19	0.0000000521248
Gossypium raimondii	Chr05	17	CH_gra_100	27	79	0.000000000322828
Gossypium raimondii	Chr03	18	CH_gra_50	12	13	0.000000000441572
Gossypium raimondii	Chr05	18	CH_gra_38	53	211	4.77529e-16
Malus domestica	11	17	CH_mdo_77	17	49	0.0000000643466
Malus domestica	11	18	CH_mdo_16	17	49	0.0000000643466
Manihot esculenta	scaffold07035	17	CH_mes_246	11	23	0.000775178
Manihot esculenta	scaffold08265	17	CH_mes_234	7	8	0.000585288
Manihot esculenta	scaffold03235	18	CH_mes_13	10	15	0.000041825
Manihot esculenta	scaffold07035	18	CH_mes_17	11	23	0.000775178
Manihot esculenta	scaffold11106	18	CH_mes_14	12	24	0.0000957718
Manihot esculenta	scaffold11581	18	CH_mes_15	10	17	0.000241189
Oryza sativa ssp. japonica	3	17	CH_osa_409	10	26	0.000655366
Oryza sativa ssp. japonica	3	17	CH_osa_302	15	56	0.0000506196
Oryza sativa ssp. japonica	3	17	CH_osa_321	13	42	0.00009348
Oryza sativa ssp. japonica	1	18	CH_osa_115	13	46	0.000325651
Oryza sativa ssp. japonica	1	18	CH_osa_38	46	287	0.00000000000159201
Oryza sativa ssp. japonica	1	18	CH_osa_119	25	180	0.000537668
Oryza sativa ssp. japonica	1	18	CH_osa_62	10	15	0.00000053389
Oryza sativa ssp. japonica	3	18	CH_osa_105	13	42	0.00009348
Oryza sativa ssp. japonica	3	18	CH_osa_100	15	56	0.0000506196
Oryza sativa ssp. japonica	3	18	CH_osa_123	10	26	0.000655366
Oryza sativa ssp. japonica	6	18	CH_osa_110	10	23	0.000155926
Populus trichocarpa	Chr07	18	CH_ptr_96	11	17	0.0000112196
Populus trichocarpa	Chr18	18	CH_ptr_103	10	15	0.0000487775
Prunus persica	scaffold_6	17	CH_ppe_164	23	61	0.0000000226659
Prunus persica	scaffold_2	18	CH_ppe_98	13	25	0.0000172239
Prunus persica	scaffold_4	18	CH_ppe_108	47	296	0.000140815
Prunus persica	scaffold_6	18	CH_ppe_70	23	61	0.0000000226659
Prunus persica	scaffold_6	18	CH_ppe_119	10	18	0.000750666
Prunus persica	scaffold_6	18	CH_ppe_55	43	168	0.0000000000420786
Prunus persica	scaffold_7	18	CH_ppe_82	10	11	0.000000284695
Ricinus communis	29751	17	CH_rco_113	21	63	0.000000764534
Ricinus communis	29676	18	CH_rco_19	11	16	0.00000210023
Ricinus communis	29678	18	CH_rco_17	12	16	0.0000000544037
Ricinus communis	29751	18	CH_rco_18	21	63	0.000000764534
Ricinus communis	30148	18	CH_rco_15	12	15	0.0000000143822
Solanum lycopersicum	ch02	17	CH_sly_157	10	11	0.0000000549454
Solanum lycopersicum	ch04	17	CH_sly_471	9	16	0.000822776
Solanum lycopersicum	ch01	18	CH_sly_82	12	24	0.0000213052
Solanum lycopersicum	ch02	18	CH_sly_64	10	11	0.0000000549454
Vitis vinifera	chr5	17	CH_vvi_71	20	29	0.000000000000043473
Vitis vinifera	chr16	18	CH_vvi_76	12	17	0.000000233372
Vitis vinifera	chr5	18	CH_vvi_45	20	29	0.000000000000043473
Vitis vinifera	chrUn	18	CH_vvi_86	10	13	0.00000345809
Zea mays	1	17	CH_zma_219	15	52	0.000279988
Zea mays	1	18	CH_zma_40	15	52	0.000279988

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V