Functional clusters
Information
- Type
- Mapman term
- Identifier
- 26
- Description
- misc
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis lyrata | scaffold_4 | 18 | CH_aly_3 | 13 | 27 | 0.0000000522061 |
Arabidopsis thaliana | 3 | 17 | CH_ath_239 | 19 | 68 | 0.00000727789 |
Arabidopsis thaliana | 2 | 18 | CH_ath_92 | 14 | 47 | 0.000696299 |
Arabidopsis thaliana | 3 | 18 | CH_ath_68 | 19 | 68 | 0.00000727789 |
Arabidopsis thaliana | 4 | 18 | CH_ath_72 | 13 | 29 | 0.0000106533 |
Arabidopsis thaliana | 5 | 18 | CH_ath_63 | 10 | 13 | 0.000000458714 |
Brassica rapa | A06 | 17 | CH_bra_264 | 9 | 14 | 0.000639256 |
Brassica rapa | A06 | 17 | CH_bra_193 | 9 | 12 | 0.0000785054 |
Brassica rapa | A04 | 18 | CH_bra_21 | 13 | 19 | 0.000000105898 |
Brassica rapa | A10 | 18 | CH_bra_42 | 10 | 18 | 0.000708289 |
Capsella rubella | scaffold_5 | 17 | CH_cru_190 | 10 | 13 | 0.00000700006 |
Capsella rubella | scaffold_2 | 18 | CH_cru_42 | 12 | 17 | 0.000000541182 |
Capsella rubella | scaffold_3 | 18 | CH_cru_57 | 10 | 15 | 0.0000652552 |
Capsella rubella | scaffold_4 | 18 | CH_cru_30 | 10 | 10 | 0.0000000292648 |
Capsella rubella | scaffold_5 | 18 | CH_cru_46 | 10 | 13 | 0.00000700006 |
Capsella rubella | scaffold_7 | 18 | CH_cru_47 | 14 | 28 | 0.00000815091 |
Capsella rubella | scaffold_7 | 18 | CH_cru_60 | 12 | 24 | 0.000155064 |
Capsella rubella | scaffold_8 | 18 | CH_cru_28 | 14 | 17 | 0.000000000270171 |
Citrus sinensis | scaffold00031 | 18 | CH_csi_16 | 15 | 27 | 0.000000134208 |
Citrus sinensis | scaffold00033 | 18 | CH_csi_18 | 13 | 24 | 0.00000528047 |
Eucalyptus grandis | scaffold_6 | 17 | CH_egr_278 | 23 | 45 | 0.000000000142739 |
Eucalyptus grandis | scaffold_8 | 17 | CH_egr_553 | 17 | 36 | 0.00000280533 |
Eucalyptus grandis | scaffold_11 | 18 | CH_egr_231 | 12 | 18 | 0.00000801721 |
Eucalyptus grandis | scaffold_2 | 18 | CH_egr_196 | 12 | 14 | 0.000000051674 |
Eucalyptus grandis | scaffold_4 | 18 | CH_egr_269 | 17 | 47 | 0.000415691 |
Eucalyptus grandis | scaffold_4 | 18 | CH_egr_256 | 14 | 29 | 0.0000921105 |
Eucalyptus grandis | scaffold_6 | 18 | CH_egr_163 | 23 | 45 | 0.000000000142739 |
Eucalyptus grandis | scaffold_7 | 18 | CH_egr_246 | 11 | 16 | 0.0000282188 |
Eucalyptus grandis | scaffold_8 | 18 | CH_egr_223 | 17 | 36 | 0.00000280533 |
Eucalyptus grandis | scaffold_8 | 18 | CH_egr_248 | 10 | 13 | 0.0000295379 |
Eucalyptus grandis | scaffold_9 | 18 | CH_egr_170 | 12 | 12 | 0.000000000651245 |
Glycine max | Gm09 | 17 | CH_gma_233 | 23 | 79 | 0.00000167522 |
Glycine max | Gm02 | 18 | CH_gma_60 | 10 | 12 | 0.00000091607 |
Glycine max | Gm05 | 18 | CH_gma_81 | 12 | 28 | 0.000624008 |
Glycine max | Gm07 | 18 | CH_gma_83 | 10 | 19 | 0.000892614 |
Glycine max | Gm09 | 18 | CH_gma_64 | 23 | 79 | 0.00000167522 |
Glycine max | Gm15 | 18 | CH_gma_50 | 13 | 19 | 0.0000000521248 |
Gossypium raimondii | Chr05 | 17 | CH_gra_100 | 27 | 79 | 0.000000000322828 |
Gossypium raimondii | Chr03 | 18 | CH_gra_50 | 12 | 13 | 0.000000000441572 |
Gossypium raimondii | Chr05 | 18 | CH_gra_38 | 53 | 211 | 4.77529e-16 |
Malus domestica | 11 | 17 | CH_mdo_77 | 17 | 49 | 0.0000000643466 |
Malus domestica | 11 | 18 | CH_mdo_16 | 17 | 49 | 0.0000000643466 |
Manihot esculenta | scaffold07035 | 17 | CH_mes_246 | 11 | 23 | 0.000775178 |
Manihot esculenta | scaffold08265 | 17 | CH_mes_234 | 7 | 8 | 0.000585288 |
Manihot esculenta | scaffold03235 | 18 | CH_mes_13 | 10 | 15 | 0.000041825 |
Manihot esculenta | scaffold07035 | 18 | CH_mes_17 | 11 | 23 | 0.000775178 |
Manihot esculenta | scaffold11106 | 18 | CH_mes_14 | 12 | 24 | 0.0000957718 |
Manihot esculenta | scaffold11581 | 18 | CH_mes_15 | 10 | 17 | 0.000241189 |
Oryza sativa ssp. japonica | 3 | 17 | CH_osa_321 | 13 | 42 | 0.00009348 |
Oryza sativa ssp. japonica | 3 | 17 | CH_osa_409 | 10 | 26 | 0.000655366 |
Oryza sativa ssp. japonica | 3 | 17 | CH_osa_302 | 15 | 56 | 0.0000506196 |
Oryza sativa ssp. japonica | 1 | 18 | CH_osa_38 | 46 | 287 | 0.00000000000159201 |
Oryza sativa ssp. japonica | 1 | 18 | CH_osa_119 | 25 | 180 | 0.000537668 |
Oryza sativa ssp. japonica | 1 | 18 | CH_osa_62 | 10 | 15 | 0.00000053389 |
Oryza sativa ssp. japonica | 1 | 18 | CH_osa_115 | 13 | 46 | 0.000325651 |
Oryza sativa ssp. japonica | 3 | 18 | CH_osa_105 | 13 | 42 | 0.00009348 |
Oryza sativa ssp. japonica | 3 | 18 | CH_osa_100 | 15 | 56 | 0.0000506196 |
Oryza sativa ssp. japonica | 3 | 18 | CH_osa_123 | 10 | 26 | 0.000655366 |
Oryza sativa ssp. japonica | 6 | 18 | CH_osa_110 | 10 | 23 | 0.000155926 |
Populus trichocarpa | Chr07 | 18 | CH_ptr_96 | 11 | 17 | 0.0000112196 |
Populus trichocarpa | Chr18 | 18 | CH_ptr_103 | 10 | 15 | 0.0000487775 |
Prunus persica | scaffold_6 | 17 | CH_ppe_164 | 23 | 61 | 0.0000000226659 |
Prunus persica | scaffold_2 | 18 | CH_ppe_98 | 13 | 25 | 0.0000172239 |
Prunus persica | scaffold_4 | 18 | CH_ppe_108 | 47 | 296 | 0.000140815 |
Prunus persica | scaffold_6 | 18 | CH_ppe_70 | 23 | 61 | 0.0000000226659 |
Prunus persica | scaffold_6 | 18 | CH_ppe_119 | 10 | 18 | 0.000750666 |
Prunus persica | scaffold_6 | 18 | CH_ppe_55 | 43 | 168 | 0.0000000000420786 |
Prunus persica | scaffold_7 | 18 | CH_ppe_82 | 10 | 11 | 0.000000284695 |
Ricinus communis | 29751 | 17 | CH_rco_113 | 21 | 63 | 0.000000764534 |
Ricinus communis | 29676 | 18 | CH_rco_19 | 11 | 16 | 0.00000210023 |
Ricinus communis | 29678 | 18 | CH_rco_17 | 12 | 16 | 0.0000000544037 |
Ricinus communis | 29751 | 18 | CH_rco_18 | 21 | 63 | 0.000000764534 |
Ricinus communis | 30148 | 18 | CH_rco_15 | 12 | 15 | 0.0000000143822 |
Solanum lycopersicum | ch02 | 17 | CH_sly_157 | 10 | 11 | 0.0000000549454 |
Solanum lycopersicum | ch04 | 17 | CH_sly_471 | 9 | 16 | 0.000822776 |
Solanum lycopersicum | ch01 | 18 | CH_sly_82 | 12 | 24 | 0.0000213052 |
Solanum lycopersicum | ch02 | 18 | CH_sly_64 | 10 | 11 | 0.0000000549454 |
Vitis vinifera | chr5 | 17 | CH_vvi_71 | 20 | 29 | 0.000000000000043473 |
Vitis vinifera | chr16 | 18 | CH_vvi_76 | 12 | 17 | 0.000000233372 |
Vitis vinifera | chr5 | 18 | CH_vvi_45 | 20 | 29 | 0.000000000000043473 |
Vitis vinifera | chrUn | 18 | CH_vvi_86 | 10 | 13 | 0.00000345809 |
Zea mays | 1 | 17 | CH_zma_219 | 15 | 52 | 0.000279988 |
Zea mays | 1 | 18 | CH_zma_40 | 15 | 52 | 0.000279988 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |