PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 21.4
Description: redox.glutaredoxins

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_7	17	CH_aly_71	3	4	0.000118551
Arabidopsis thaliana	3	17	CH_ath_346	3	4	0.000243806
Arabidopsis thaliana	4	17	CH_ath_101	5	5	0.0000000000800863
Brassica rapa	A01	17	CH_bra_144	4	6	0.00000965676
Capsella rubella	scaffold_5	17	CH_cru_294	3	4	0.000529923
Capsella rubella	scaffold_7	17	CH_cru_24	8	11	2.03975e-16
Citrus sinensis	scaffold00001	17	CH_csi_72	4	5	0.00000030184
Eucalyptus grandis	scaffold_2	17	CH_egr_704	3	3	0.0000591889
Eucalyptus grandis	scaffold_8	17	CH_egr_426	4	4	0.0000000676703
Glycine max	Gm02	17	CH_gma_181	4	4	0.000000281237
Glycine max	Gm03	17	CH_gma_227	4	5	0.00000140451
Glycine max	Gm10	17	CH_gma_99	5	5	0.000000000412019
Glycine max	Gm19	17	CH_gma_226	4	5	0.00000140451
Gossypium raimondii	Chr04	17	CH_gra_343	3	4	0.000589435
Gossypium raimondii	Chr07	17	CH_gra_272	3	3	0.000147532
Gossypium raimondii	Chr11	17	CH_gra_271	3	3	0.000147532
Malus domestica	11	17	CH_mdo_49	5	10	0.0000000056266
Malus domestica	7	17	CH_mdo_170	3	3	0.0000315763
Manihot esculenta	scaffold04457	17	CH_mes_88	4	5	0.000000769198
Manihot esculenta	scaffold08265	17	CH_mes_206	3	4	0.000390414
Oryza sativa ssp. japonica	11	17	CH_osa_178	4	7	0.000000595628
Populus trichocarpa	Chr02	17	CH_ptr_76	7	10	0.0000000000000912058
Populus trichocarpa	Chr08	17	CH_ptr_465	3	4	0.000623777
Populus trichocarpa	Chr14	17	CH_ptr_93	6	7	0.00000000000367948
Prunus persica	scaffold_8	17	CH_ppe_189	4	5	0.0000000985479
Ricinus communis	29647	17	CH_rco_112	4	6	0.000000746508
Solanum lycopersicum	ch01	17	CH_sly_364	3	3	0.000153521
Solanum lycopersicum	ch04	17	CH_sly_8	11	11	3.56775e-27
Solanum lycopersicum	ch09	17	CH_sly_186	4	4	0.000000243158
Solanum lycopersicum	ch04	18	CH_sly_8	11	11	3.56775e-27
Zea mays	10	17	CH_zma_247	3	4	0.000443584

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V