PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 16.2
Description: secondary metabolism.phenylpropanoids

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_5	17	CH_aly_90	3	4	0.000468269
Arabidopsis thaliana	3	17	CH_ath_240	4	5	0.00000736123
Capsella rubella	scaffold_4	17	CH_cru_304	3	3	0.000614311
Citrus sinensis	scaffold00061	17	CH_csi_129	4	5	0.0000205853
Eucalyptus grandis	scaffold_1	17	CH_egr_373	6	6	0.00000000602215
Eucalyptus grandis	scaffold_1	17	CH_egr_126	12	18	1.64542e-17
Eucalyptus grandis	scaffold_10	17	CH_egr_374	6	6	0.00000000602215
Eucalyptus grandis	scaffold_11	17	CH_egr_209	8	8	0.000000000000327416
Eucalyptus grandis	scaffold_2	17	CH_egr_333	7	9	0.00000000158106
Eucalyptus grandis	scaffold_3	17	CH_egr_319	10	32	0.00000000097628
Eucalyptus grandis	scaffold_5	17	CH_egr_545	9	46	0.00000206985
Eucalyptus grandis	scaffold_5	17	CH_egr_518	5	5	0.000000811919
Eucalyptus grandis	scaffold_6	17	CH_egr_208	8	8	0.000000000000327416
Eucalyptus grandis	scaffold_8	17	CH_egr_154	9	9	0.00000000000000239992
Eucalyptus grandis	scaffold_1	18	CH_egr_103	12	18	1.64542e-17
Eucalyptus grandis	scaffold_3	18	CH_egr_176	10	32	0.00000000097628
Eucalyptus grandis	scaffold_5	18	CH_egr_202	12	90	0.00000014979
Eucalyptus grandis	scaffold_5	18	CH_egr_106	16	55	5.57888e-17
Eucalyptus grandis	scaffold_8	18	CH_egr_191	12	73	0.0000000112686
Glycine max	Gm04	17	CH_gma_97	6	6	0.000000000266043
Glycine max	Gm08	17	CH_gma_345	4	5	0.000079292
Glycine max	Gm10	17	CH_gma_344	4	5	0.000079292
Glycine max	Gm14	17	CH_gma_291	4	4	0.0000159109
Glycine max	Gm18	17	CH_gma_251	5	8	0.00000361436
Glycine max	Gm20	17	CH_gma_292	4	4	0.0000159109
Gossypium raimondii	Chr05	17	CH_gra_204	5	9	0.00000538038
Gossypium raimondii	Chr07	17	CH_gra_220	4	4	0.0000106927
Gossypium raimondii	Chr10	17	CH_gra_191	5	8	0.00000239938
Gossypium raimondii	Chr10	17	CH_gra_78	9	21	0.00000000000306217
Gossypium raimondii	Chr11	17	CH_gra_65	8	11	0.000000000000450375
Gossypium raimondii	Chr10	18	CH_gra_63	10	111	0.00000153002
Malus domestica	10	17	CH_mdo_135	5	12	0.00000647866
Malus domestica	13	17	CH_mdo_152	4	5	0.0000147327
Manihot esculenta	scaffold02307	17	CH_mes_119	4	4	0.00000609784
Manihot esculenta	scaffold04953	17	CH_mes_143	4	5	0.0000303899
Oryza sativa ssp. japonica	8	17	CH_osa_93	6	9	0.00000000134662
Populus trichocarpa	Chr01	17	CH_ptr_108	7	8	0.0000000000326788
Populus trichocarpa	Chr01	17	CH_ptr_60	9	11	0.00000000000000578542
Populus trichocarpa	Chr05	17	CH_ptr_236	5	6	0.000000929241
Populus trichocarpa	Chr08	17	CH_ptr_328	4	4	0.000030066
Populus trichocarpa	Chr10	17	CH_ptr_481	6	33	0.000787147
Populus trichocarpa	Chr13	17	CH_ptr_37	12	22	8.31232e-18
Populus trichocarpa	Chr13	18	CH_ptr_33	12	22	8.31232e-18
Prunus persica	scaffold_3	17	CH_ppe_61	10	20	0.0000000000000127746
Prunus persica	scaffold_7	17	CH_ppe_31	12	20	1.52218e-19
Prunus persica	scaffold_3	18	CH_ppe_44	10	20	0.0000000000000127746
Prunus persica	scaffold_7	18	CH_ppe_29	12	20	1.52218e-19
Ricinus communis	29646	17	CH_rco_89	5	5	0.0000000382915
Ricinus communis	29929	17	CH_rco_88	6	10	0.0000000346208
Ricinus communis	29983	17	CH_rco_37	7	9	0.0000000000258416
Ricinus communis	30147	17	CH_rco_256	4	8	0.000597838
Solanum lycopersicum	ch02	17	CH_sly_223	5	7	0.00000228404
Vitis vinifera	chr12	17	CH_vvi_9	18	20	9.06602e-35
Vitis vinifera	chr9	17	CH_vvi_79	10	21	0.000000000000270835
Vitis vinifera	chr12	18	CH_vvi_9	18	20	9.06602e-35
Vitis vinifera	chr16	18	CH_vvi_56	10	39	0.000000000446459
Vitis vinifera	chr9	18	CH_vvi_48	10	21	0.000000000000270835
Zea mays	3	17	CH_zma_98	5	7	0.000000633589
Zea mays	4	17	CH_zma_193	4	6	0.000121621
Zea mays	6	17	CH_zma_135	4	4	0.00000815698

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V