PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR025886
Description: Phloem protein 2-like

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00032	13	CH_atr_196	3	3	0.000000327962
Arabidopsis lyrata	scaffold_5	13	CH_aly_14	10	13	8.20475e-24
Arabidopsis lyrata	scaffold_5	14	CH_aly_15	10	13	8.20475e-24
Arabidopsis thaliana	2	13	CH_ath_15	10	14	1.99598e-24
Arabidopsis thaliana	2	14	CH_ath_12	10	14	1.99598e-24
Brassica rapa	A02	13	CH_bra_25	6	7	0.0000000000000348775
Brassica rapa	A06	13	CH_bra_55	5	6	0.0000000000463381
Capsella rubella	scaffold_5	13	CH_cru_17	9	10	1.63539e-22
Carica papaya	supercontig_135	13	CH_cpa_308	3	8	0.000173856
Citrullus lanatus	Chr1	13	CH_cla_90	6	18	0.000000000138224
Citrullus lanatus	Chr6	13	CH_cla_85	5	6	0.0000000000621665
Citrus sinensis	scaffold00008	13	CH_csi_153	3	3	0.00000241448
Cucumis melo	CM3.5_scaffold00030	13	CH_cme_94	5	8	0.000000000379144
Cucumis melo	CM3.5_scaffold00049	13	CH_cme_179	4	9	0.00000123665
Eucalyptus grandis	scaffold_10	13	CH_egr_248	10	45	0.00000000000000370656
Eucalyptus grandis	scaffold_2	13	CH_egr_1047	3	3	0.0000943428
Eucalyptus grandis	scaffold_5	13	CH_egr_380	6	8	0.00000000000598665
Eucalyptus grandis	scaffold_8	13	CH_egr_496	5	6	0.000000000999025
Eucalyptus grandis	scaffold_8	13	CH_egr_609	5	10	0.0000000417747
Eucalyptus grandis	scaffold_8	13	CH_egr_1048	3	3	0.0000943428
Eucalyptus grandis	scaffold_10	14	CH_egr_157	12	112	0.0000000000000036993
Eucalyptus grandis	scaffold_8	14	CH_egr_208	11	258	0.00000000276754
Fragaria vesca	scf0513168	13	CH_fve_51	7	15	0.00000000000000805697
Glycine max	Gm20	13	CH_gma_275	4	6	0.0000000540988
Glycine max	Gm20	13	CH_gma_444	3	3	0.00000750364
Gossypium raimondii	Chr06	13	CH_gra_338	3	3	0.00000758354
Lotus japonicus	chr2	13	CH_lja_271	3	11	0.00040616
Lotus japonicus	chr5	13	CH_lja_199	3	7	0.0000862623
Malus domestica	4	13	CH_mdo_437	3	10	0.000260308
Malus domestica	5	13	CH_mdo_92	4	6	0.000000010528
Medicago truncatula	chr1	13	CH_mtr_5	20	35	4.70505e-52
Medicago truncatula	chr1	14	CH_mtr_6	20	35	4.70505e-52
Oryza sativa ssp. japonica	2	13	CH_osa_92	6	10	0.0000000000000105851
Populus trichocarpa	Chr12	13	CH_ptr_462	3	3	0.0000108823
Populus trichocarpa	Chr15	13	CH_ptr_160	6	15	0.0000000000101715
Populus trichocarpa	Chr18	13	CH_ptr_249	4	4	0.00000000650387
Prunus persica	scaffold_4	13	CH_ppe_499	4	28	0.0000696729
Prunus persica	scaffold_8	13	CH_ppe_279	4	6	0.0000000515388
Solanum lycopersicum	ch01	13	CH_sly_441	3	3	0.0000221954
Solanum lycopersicum	ch02	13	CH_sly_259	4	5	0.0000000890881
Solanum lycopersicum	ch12	13	CH_sly_770	4	33	0.000715976
Solanum tuberosum	chr01	13	CH_stu_796	3	3	0.0000600009
Solanum tuberosum	chr02	13	CH_stu_244	6	10	0.0000000000171689
Solanum tuberosum	chr11	13	CH_stu_428	4	4	0.0000000683226
Thellungiella parvula	ch2-4	13	CH_tpa_69	4	4	0.0000000058365
Theobroma cacao	scaffold_4	13	CH_tca_94	6	10	0.0000000000020546
Theobroma cacao	scaffold_5	13	CH_tca_506	3	5	0.000203642
Theobroma cacao	scaffold_6	13	CH_tca_76	7	17	0.000000000000135716
Theobroma cacao	scaffold_6	15	CH_tca_3	4	15	0.00000235202
Vitis vinifera	chr1	13	CH_vvi_135	5	6	0.0000000000123342
Vitis vinifera	chrUn	13	CH_vvi_101	6	8	0.0000000000000281321

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V