PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR025287
Description: Wall-associated receptor kinase galacturonan-binding domain

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00022	13	CH_atr_51	6	9	0.000000000000108104
Arabidopsis lyrata	scaffold_3	13	CH_aly_408	3	4	0.00010744
Beta vulgaris	Bvchr3.sca005	13	CH_bvu_29	9	21	0.00000000000000138138
Citrus sinensis	scaffold00031	13	CH_csi_231	3	4	0.000106952
Eucalyptus grandis	scaffold_11	13	CH_egr_57	15	18	2.6397e-31
Eucalyptus grandis	scaffold_2	13	CH_egr_82	15	31	9.40479e-26
Eucalyptus grandis	scaffold_3	13	CH_egr_770	7	39	0.00000115705
Eucalyptus grandis	scaffold_6	13	CH_egr_132	11	15	7.57335e-21
Eucalyptus grandis	scaffold_11	14	CH_egr_55	15	18	2.6397e-31
Eucalyptus grandis	scaffold_2	14	CH_egr_79	15	31	9.40479e-26
Eucalyptus grandis	scaffold_3	14	CH_egr_226	10	119	0.000000158336
Eucalyptus grandis	scaffold_6	14	CH_egr_114	11	15	7.57335e-21
Fragaria vesca	LG3	13	CH_fve_87	8	21	0.00000000000450427
Fragaria vesca	LG3	13	CH_fve_68	8	15	0.000000000000144091
Fragaria vesca	LG6	13	CH_fve_570	6	61	0.000240794
Fragaria vesca	LG7	13	CH_fve_629	4	12	0.000472108
Glycine max	Gm09	13	CH_gma_221	5	7	0.0000000038357
Glycine max	Gm13	13	CH_gma_81	9	35	0.0000000000000254886
Gossypium raimondii	Chr04	13	CH_gra_597	3	3	0.000826097
Gossypium raimondii	Chr05	13	CH_gra_139	6	7	0.00000000011674
Gossypium raimondii	Chr07	13	CH_gra_598	3	3	0.000826097
Gossypium raimondii	Chr05	14	CH_gra_42	10	14	7.9502e-19
Manihot esculenta	scaffold04043	13	CH_mes_377	3	5	0.000492814
Manihot esculenta	scaffold04043	15	CH_mes_6	3	5	0.000273074
Medicago truncatula	chr1	13	CH_mtr_108	10	37	8.34338e-17
Medicago truncatula	chr1	13	CH_mtr_4	26	80	6.83761e-53
Medicago truncatula	chr1	13	CH_mtr_555	4	5	0.000000650169
Medicago truncatula	chr1	14	CH_mtr_2	31	105	1.02509e-62
Medicago truncatula	chr1	15	CH_mtr_2	10	75	2.53697e-17
Medicago truncatula	chr1	16	CH_mtr_2	10	75	2.53697e-17
Oryza sativa ssp. japonica	1	13	CH_osa_386	5	11	0.0000011522
Oryza sativa ssp. japonica	1	13	CH_osa_21	13	17	1.68241e-27
Oryza sativa ssp. japonica	1	13	CH_osa_565	4	7	0.0000416865
Oryza sativa ssp. japonica	2	13	CH_osa_595	4	8	0.0000832311
Oryza sativa ssp. japonica	4	13	CH_osa_25	16	61	9.53239e-25
Oryza sativa ssp. japonica	9	13	CH_osa_204	6	10	0.000000001097
Oryza sativa ssp. japonica	1	14	CH_osa_24	13	17	1.68241e-27
Oryza sativa ssp. japonica	4	14	CH_osa_27	16	61	9.53239e-25
Oryza sativa ssp. japonica	1	15	CH_osa_9	5	12	0.0000000131423
Populus trichocarpa	Chr07	13	CH_ptr_115	8	13	0.0000000000000440999
Populus trichocarpa	Chr07	13	CH_ptr_522	4	7	0.0000446887
Populus trichocarpa	Chr17	13	CH_ptr_622	4	9	0.000160276
Populus trichocarpa	Chr07	14	CH_ptr_87	12	166	0.000000000349789
Populus trichocarpa	Chr07	15	CH_ptr_16	3	5	0.000602251
Populus trichocarpa	scaffold_67	15	CH_ptr_5	4	10	0.0000138078
Prunus persica	scaffold_3	13	CH_ppe_27	14	25	1.59028e-26
Prunus persica	scaffold_3	14	CH_ppe_27	14	25	1.59028e-26
Prunus persica	scaffold_2	15	CH_ppe_10	5	75	0.000560951
Solanum lycopersicum	ch01	13	CH_sly_159	5	6	0.000000000183715
Solanum tuberosum	chr03	13	CH_stu_835	3	3	0.000127552
Solanum tuberosum	chr03	13	CH_stu_1021	3	4	0.000509628
Solanum tuberosum	chr10	13	CH_stu_162	7	9	0.0000000000000195491
Solanum tuberosum	chr03	15	CH_stu_12	3	4	0.0000568536
Theobroma cacao	scaffold_3	13	CH_tca_368	4	6	0.00000846504
Theobroma cacao	scaffold_4	13	CH_tca_281	5	11	0.000000520821
Theobroma cacao	scaffold_4	13	CH_tca_475	4	9	0.0000707565
Theobroma cacao	scaffold_7	13	CH_tca_48	9	15	7.76038e-17
Theobroma cacao	scaffold_4	15	CH_tca_1	5	11	0.0000000126589
Vitis vinifera	chr12	13	CH_vvi_194	5	8	0.00000000771373
Zea mays	3	13	CH_zma_113	5	9	0.0000000141468
Zea mays	8	13	CH_zma_538	3	5	0.000788626
Zea mays	3	15	CH_zma_14	3	6	0.000375717

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V