PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR002867
Description: Zinc finger, C6HC-type

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00129	13	CH_atr_73	5	7	0.00000000000486596
Arabidopsis lyrata	scaffold_5	13	CH_aly_15	11	18	4.6333e-23
Arabidopsis lyrata	scaffold_5	14	CH_aly_16	11	18	4.6333e-23
Arabidopsis thaliana	2	13	CH_ath_351	3	3	0.0000448302
Arabidopsis thaliana	3	13	CH_ath_39	8	16	5.21545e-16
Capsella rubella	scaffold_4	13	CH_cru_417	3	3	0.000100317
Capsella rubella	scaffold_5	13	CH_cru_78	7	13	0.00000000000071591
Capsella rubella	scaffold_5	14	CH_cru_34	11	212	0.000000000668848
Carica papaya	supercontig_139	13	CH_cpa_154	3	3	0.0000064329
Citrus sinensis	scaffold00013	13	CH_csi_76	4	4	0.00000000466573
Citrus sinensis	scaffold00162	13	CH_csi_89	4	5	0.0000000233165
Eucalyptus grandis	scaffold_3	13	CH_egr_933	3	4	0.0000233408
Eucalyptus grandis	scaffold_5	13	CH_egr_1155	3	8	0.000326246
Eucalyptus grandis	scaffold_5	13	CH_egr_749	4	11	0.000000954053
Fragaria vesca	LG1	13	CH_fve_42	7	11	5.74891e-16
Glycine max	Gm15	13	CH_gma_482	3	4	0.0000188865
Lotus japonicus	chr6	13	CH_lja_97	4	17	0.000000713891
Manihot esculenta	scaffold12262	13	CH_mes_65	4	4	0.00000000350178
Medicago truncatula	chr2	13	CH_mtr_147	7	14	0.0000000000000072373
Medicago truncatula	chr3	13	CH_mtr_128	7	12	0.00000000000000167181
Medicago truncatula	chr3	13	CH_mtr_851	3	4	0.0000696583
Oryza sativa ssp. japonica	3	13	CH_osa_504	3	4	0.0000223373
Oryza sativa ssp. japonica	4	13	CH_osa_574	3	5	0.0000558243
Oryza sativa ssp. japonica	9	13	CH_osa_320	4	8	0.000000167208
Ostreococcus lucimarinus	Chr_2	13	CH_olu_89	2	2	0.000768738
Prunus persica	scaffold_6	13	CH_ppe_580	3	6	0.000177454
Prunus persica	scaffold_7	13	CH_ppe_173	5	7	0.0000000000658835
Solanum lycopersicum	ch01	13	CH_sly_394	3	3	0.00000656728
Solanum tuberosum	chr03	13	CH_stu_646	3	3	0.0000111824

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V