PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0004185
Description: serine-type carboxypeptidase activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00029	1	CH_atr_92	4	5	0.000000435822
Amborella trichopoda	scaffold00038	1	CH_atr_36	6	9	0.0000000000113219
Amborella trichopoda	scaffold00089	1	CH_atr_28	8	20	0.0000000000000228687
Amborella trichopoda	scaffold00029	2	CH_atr_89	4	5	0.000000435822
Amborella trichopoda	scaffold00038	2	CH_atr_35	6	9	0.0000000000113219
Amborella trichopoda	scaffold00089	2	CH_atr_26	8	20	0.0000000000000228687
Amborella trichopoda	scaffold00029	3	CH_atr_141	4	5	0.000000546102
Amborella trichopoda	scaffold00038	3	CH_atr_54	6	9	0.0000000000160436
Amborella trichopoda	scaffold00089	3	CH_atr_20	10	20	7.38234e-20
Amborella trichopoda	scaffold00089	6	CH_atr_18	10	20	7.38234e-20
Amborella trichopoda	scaffold00089	9	CH_atr_13	3	8	0.000426615
Arabidopsis lyrata	scaffold_4	1	CH_aly_25	7	12	0.000000000000337523
Arabidopsis lyrata	scaffold_5	1	CH_aly_50	5	6	0.00000000136222
Arabidopsis lyrata	scaffold_5	2	CH_aly_65	5	6	0.00000000136222
Arabidopsis lyrata	scaffold_5	3	CH_aly_76	5	6	0.00000000136222
Arabidopsis thaliana	1	1	CH_ath_58	5	5	0.000000000327509
Arabidopsis thaliana	2	1	CH_ath_27	6	6	0.000000000000487393
Arabidopsis thaliana	3	1	CH_ath_323	3	4	0.000557003
Arabidopsis thaliana	3	1	CH_ath_145	4	5	0.00000107748
Arabidopsis thaliana	2	2	CH_ath_47	6	6	0.000000000000487393
Arabidopsis thaliana	3	2	CH_ath_392	3	4	0.000557003
Arabidopsis thaliana	2	3	CH_ath_53	6	6	0.000000000000487393
Arabidopsis thaliana	3	3	CH_ath_417	3	4	0.000557003
Arabidopsis thaliana	2	4	CH_ath_24	10	159	0.00000000344301
Beta vulgaris	0034.scaffold00131	1	CH_bvu_43	6	15	0.00000000151814
Beta vulgaris	Bvchr1.sca004	1	CH_bvu_222	3	5	0.000913248
Beta vulgaris	Bvchr3.sca010	1	CH_bvu_145	3	3	0.0000915457
Beta vulgaris	Bvchr9.sca001	1	CH_bvu_144	3	3	0.0000915457
Beta vulgaris	0034.scaffold00131	2	CH_bvu_51	6	15	0.00000000151814
Beta vulgaris	Bvchr1.sca004	2	CH_bvu_298	3	5	0.000913248
Beta vulgaris	Bvchr3.sca010	2	CH_bvu_171	3	3	0.0000915457
Beta vulgaris	Bvchr9.sca001	2	CH_bvu_170	3	3	0.0000915457
Beta vulgaris	0034.scaffold00131	3	CH_bvu_68	6	15	0.00000000182109
Beta vulgaris	Bvchr1.sca004	3	CH_bvu_375	3	5	0.000996198
Beta vulgaris	Bvchr3.sca010	3	CH_bvu_256	3	3	0.000099868
Beta vulgaris	Bvchr6.sca026	3	CH_bvu_257	3	3	0.000099868
Beta vulgaris	Bvchr9.sca001	3	CH_bvu_255	3	3	0.000099868
Beta vulgaris	Bvchr6.sca026	9	CH_bvu_6	3	3	0.0000188669
Capsella rubella	scaffold_4	1	CH_cru_8	9	9	2.74061e-21
Capsella rubella	scaffold_4	4	CH_cru_9	11	103	0.00000000000103011
Capsella rubella	scaffold_4	5	CH_cru_16	11	103	0.00000000000103011
Capsella rubella	scaffold_4	6	CH_cru_22	11	103	0.00000000000103011
Carica papaya	supercontig_53	1	CH_cpa_83	3	3	0.0000367595
Carica papaya	supercontig_53	2	CH_cpa_94	3	3	0.0000367595
Carica papaya	supercontig_53	3	CH_cpa_164	3	3	0.0000367595
Citrullus lanatus	Chr10	1	CH_cla_148	3	4	0.000195205
Citrullus lanatus	Chr5	1	CH_cla_118	3	3	0.000048847
Citrullus lanatus	Chr10	2	CH_cla_171	3	4	0.000195205
Citrullus lanatus	Chr5	2	CH_cla_128	3	3	0.000048847
Citrullus lanatus	Chr10	3	CH_cla_229	3	4	0.000195205
Citrullus lanatus	Chr5	3	CH_cla_167	3	3	0.000048847
Citrus sinensis	scaffold00004	1	CH_csi_140	3	4	0.000398668
Cucumis melo	CM3.5_scaffold00011	1	CH_cme_202	3	6	0.000869625
Cucumis melo	CM3.5_scaffold00029	1	CH_cme_111	3	3	0.0000435951
Cucumis melo	CM3.5_scaffold00011	2	CH_cme_259	3	6	0.000869625
Cucumis melo	CM3.5_scaffold00011	3	CH_cme_357	3	6	0.000869625
Eucalyptus grandis	scaffold_1	1	CH_egr_246	6	10	0.00000000335578
Eucalyptus grandis	scaffold_11	1	CH_egr_464	4	6	0.0000322795
Eucalyptus grandis	scaffold_7	1	CH_egr_103	8	9	0.00000000000000103508
Eucalyptus grandis	scaffold_7	1	CH_egr_89	14	78	2.83857e-17
Eucalyptus grandis	scaffold_8	1	CH_egr_285	5	6	0.0000000355363
Eucalyptus grandis	scaffold_8	1	CH_egr_614	3	3	0.00077883
Eucalyptus grandis	scaffold_9	1	CH_egr_35	11	11	2.02732e-24
Eucalyptus grandis	scaffold_1	2	CH_egr_322	6	10	0.00000000335578
Eucalyptus grandis	scaffold_11	2	CH_egr_561	4	6	0.0000322795
Eucalyptus grandis	scaffold_7	2	CH_egr_133	8	9	0.00000000000000103508
Eucalyptus grandis	scaffold_7	2	CH_egr_116	14	78	2.83857e-17
Eucalyptus grandis	scaffold_8	2	CH_egr_774	3	3	0.00077883
Eucalyptus grandis	scaffold_8	2	CH_egr_364	5	6	0.0000000355363
Eucalyptus grandis	scaffold_9	2	CH_egr_42	11	11	2.02732e-24
Eucalyptus grandis	scaffold_1	3	CH_egr_372	6	10	0.00000000335578
Eucalyptus grandis	scaffold_11	3	CH_egr_635	4	6	0.0000322795
Eucalyptus grandis	scaffold_7	3	CH_egr_153	8	9	0.00000000000000103508
Eucalyptus grandis	scaffold_7	3	CH_egr_132	14	78	2.83857e-17
Eucalyptus grandis	scaffold_8	3	CH_egr_862	3	3	0.00077883
Eucalyptus grandis	scaffold_8	3	CH_egr_426	5	6	0.0000000355363
Eucalyptus grandis	scaffold_9	3	CH_egr_51	11	11	2.02732e-24
Eucalyptus grandis	scaffold_7	4	CH_egr_64	16	102	2.98455e-19
Eucalyptus grandis	scaffold_9	4	CH_egr_36	11	11	2.02732e-24
Eucalyptus grandis	scaffold_7	5	CH_egr_67	16	102	2.98455e-19
Eucalyptus grandis	scaffold_9	5	CH_egr_44	11	11	2.02732e-24
Eucalyptus grandis	scaffold_7	6	CH_egr_78	16	102	2.98455e-19
Eucalyptus grandis	scaffold_9	6	CH_egr_47	11	11	2.02732e-24
Fragaria vesca	LG2	1	CH_fve_38	5	5	0.0000000000820317
Fragaria vesca	LG5	1	CH_fve_181	3	3	0.0000617429
Fragaria vesca	LG2	2	CH_fve_47	5	5	0.0000000000820317
Fragaria vesca	LG5	2	CH_fve_210	3	3	0.0000617429
Fragaria vesca	LG2	3	CH_fve_71	5	5	0.0000000000820317
Fragaria vesca	LG5	3	CH_fve_276	3	3	0.0000617429
Glycine max	Gm03	1	CH_gma_136	4	4	0.000000443706
Glycine max	Gm19	1	CH_gma_294	3	3	0.00026648
Glycine max	Gm20	1	CH_gma_178	5	17	0.00000444693
Glycine max	Gm03	2	CH_gma_164	4	4	0.000000443706
Glycine max	Gm19	2	CH_gma_366	3	3	0.00026648
Glycine max	Gm20	2	CH_gma_217	5	17	0.00000444693
Glycine max	Gm03	3	CH_gma_203	4	4	0.000000443706
Glycine max	Gm19	3	CH_gma_439	3	3	0.00026648
Glycine max	Gm20	3	CH_gma_271	5	17	0.00000444693
Gossypium raimondii	Chr01	1	CH_gra_201	3	3	0.000100312
Gossypium raimondii	Chr08	1	CH_gra_200	3	3	0.000100312
Gossypium raimondii	Chr01	2	CH_gra_229	3	3	0.000100312
Gossypium raimondii	Chr08	2	CH_gra_228	3	3	0.000100312
Gossypium raimondii	Chr01	3	CH_gra_279	3	3	0.000100312
Gossypium raimondii	Chr08	3	CH_gra_278	3	3	0.000100312
Lotus japonicus	chr3	1	CH_lja_57	3	3	0.00000901662
Lotus japonicus	chr3	2	CH_lja_74	3	3	0.00000901662
Lotus japonicus	chr3	3	CH_lja_89	3	3	0.00000901662
Malus domestica	15	1	CH_mdo_106	3	3	0.0000116781
Malus domestica	15	2	CH_mdo_123	3	3	0.0000116781
Malus domestica	15	3	CH_mdo_164	3	3	0.0000129757
Medicago truncatula	chr2	1	CH_mtr_416	3	3	0.0000915177
Medicago truncatula	chr2	1	CH_mtr_286	4	6	0.0000014925
Medicago truncatula	chr2	1	CH_mtr_581	3	5	0.000913655
Medicago truncatula	chr3	1	CH_mtr_96	6	8	0.00000000000316632
Medicago truncatula	chr4	1	CH_mtr_317	4	7	0.00000347945
Medicago truncatula	chr4	1	CH_mtr_88	6	7	0.000000000000792302
Medicago truncatula	chr2	2	CH_mtr_484	3	3	0.0000915177
Medicago truncatula	chr3	2	CH_mtr_112	6	8	0.00000000000316632
Medicago truncatula	chr4	2	CH_mtr_485	3	3	0.0000915177
Medicago truncatula	chr4	2	CH_mtr_366	4	7	0.00000347945
Medicago truncatula	chr2	3	CH_mtr_643	3	3	0.0000953309
Medicago truncatula	chr3	3	CH_mtr_137	6	8	0.00000000000344157
Medicago truncatula	chr4	3	CH_mtr_644	3	3	0.0000953309
Medicago truncatula	chr4	3	CH_mtr_445	4	7	0.00000367534
Oryza sativa ssp. japonica	11	1	CH_osa_78	7	27	0.0000000000619083
Oryza sativa ssp. japonica	3	1	CH_osa_125	7	63	0.0000000373931
Oryza sativa ssp. japonica	3	1	CH_osa_278	3	3	0.0000687344
Oryza sativa ssp. japonica	5	1	CH_osa_335	3	4	0.000274719
Oryza sativa ssp. japonica	11	2	CH_osa_75	7	27	0.0000000000619083
Oryza sativa ssp. japonica	3	2	CH_osa_279	3	3	0.0000687344
Oryza sativa ssp. japonica	3	2	CH_osa_126	7	63	0.0000000373931
Oryza sativa ssp. japonica	5	2	CH_osa_354	3	4	0.000274719
Oryza sativa ssp. japonica	11	3	CH_osa_87	7	27	0.0000000000619083
Oryza sativa ssp. japonica	3	3	CH_osa_331	3	3	0.0000687344
Oryza sativa ssp. japonica	3	3	CH_osa_141	7	63	0.0000000373931
Oryza sativa ssp. japonica	5	3	CH_osa_417	3	4	0.000274719
Oryza sativa ssp. japonica	11	4	CH_osa_65	10	279	0.0000000319454
Oryza sativa ssp. japonica	11	5	CH_osa_73	10	279	0.0000000319454
Oryza sativa ssp. japonica	11	6	CH_osa_87	10	279	0.0000000319454
Oryza sativa ssp. japonica	3	7	CH_osa_35	3	5	0.000152376
Oryza sativa ssp. japonica	3	8	CH_osa_35	3	5	0.000152376
Oryza sativa ssp. japonica	3	9	CH_osa_37	3	5	0.000152376
Populus trichocarpa	Chr01	1	CH_ptr_65	7	11	0.000000000000134692
Populus trichocarpa	Chr16	1	CH_ptr_77	6	7	0.00000000000217214
Populus trichocarpa	Chr01	2	CH_ptr_71	7	11	0.000000000000134692
Populus trichocarpa	Chr16	2	CH_ptr_88	6	7	0.00000000000217214
Populus trichocarpa	Chr01	3	CH_ptr_88	7	11	0.000000000000134692
Populus trichocarpa	Chr16	3	CH_ptr_104	6	7	0.00000000000217214
Prunus persica	scaffold_2	1	CH_ppe_329	3	5	0.000892877
Prunus persica	scaffold_8	1	CH_ppe_10	10	10	5.48792e-25
Prunus persica	scaffold_2	2	CH_ppe_416	3	5	0.000892877
Prunus persica	scaffold_8	2	CH_ppe_14	10	10	5.48792e-25
Prunus persica	scaffold_2	3	CH_ppe_530	3	5	0.000892877
Prunus persica	scaffold_8	3	CH_ppe_20	10	10	5.48792e-25
Prunus persica	scaffold_8	4	CH_ppe_9	10	10	5.48792e-25
Prunus persica	scaffold_8	5	CH_ppe_10	10	10	5.48792e-25
Prunus persica	scaffold_8	6	CH_ppe_17	10	10	5.48792e-25
Ricinus communis	29929	1	CH_rco_75	4	4	0.000000187644
Ricinus communis	30099	1	CH_rco_8	8	8	1.07191e-18
Ricinus communis	29929	2	CH_rco_83	4	4	0.000000187644
Ricinus communis	30099	2	CH_rco_8	8	8	1.07191e-18
Ricinus communis	29929	3	CH_rco_109	4	4	0.000000187644
Ricinus communis	30099	3	CH_rco_10	8	8	1.07191e-18
Solanum lycopersicum	ch01	1	CH_sly_101	5	5	0.000000000726415
Solanum lycopersicum	ch01	1	CH_sly_352	3	3	0.000225954
Solanum lycopersicum	ch06	1	CH_sly_176	4	4	0.000000408386
Solanum lycopersicum	ch10	1	CH_sly_145	5	8	0.000000040498
Solanum lycopersicum	ch12	1	CH_sly_177	4	4	0.000000408386
Solanum lycopersicum	ch01	2	CH_sly_383	3	3	0.000225954
Solanum lycopersicum	ch01	2	CH_sly_101	5	5	0.000000000726415
Solanum lycopersicum	ch06	2	CH_sly_184	4	4	0.000000408386
Solanum lycopersicum	ch10	2	CH_sly_142	5	8	0.000000040498
Solanum lycopersicum	ch12	2	CH_sly_185	4	4	0.000000408386
Solanum lycopersicum	ch01	3	CH_sly_508	3	3	0.000225954
Solanum lycopersicum	ch01	3	CH_sly_138	5	5	0.000000000726415
Solanum lycopersicum	ch06	3	CH_sly_234	4	4	0.000000408386
Solanum lycopersicum	ch10	3	CH_sly_193	5	8	0.000000040498
Solanum lycopersicum	ch12	3	CH_sly_235	4	4	0.000000408386
Solanum tuberosum	chr01	1	CH_stu_441	3	3	0.000289965
Solanum tuberosum	chr01	1	CH_stu_126	6	7	0.0000000000146974
Solanum tuberosum	chr04	1	CH_stu_108	7	11	0.00000000000129548
Solanum tuberosum	chr05	1	CH_stu_345	4	8	0.0000396184
Solanum tuberosum	chr06	1	CH_stu_165	5	5	0.00000000110258
Solanum tuberosum	chr12	1	CH_stu_181	5	6	0.00000000660475
Solanum tuberosum	chr01	2	CH_stu_140	6	7	0.0000000000146974
Solanum tuberosum	chr01	2	CH_stu_496	3	3	0.000289965
Solanum tuberosum	chr04	2	CH_stu_118	7	11	0.00000000000129548
Solanum tuberosum	chr05	2	CH_stu_376	4	8	0.0000396184
Solanum tuberosum	chr06	2	CH_stu_177	5	5	0.00000000110258
Solanum tuberosum	chr12	2	CH_stu_195	5	6	0.00000000660475
Solanum tuberosum	chr01	3	CH_stu_675	3	3	0.000302392
Solanum tuberosum	chr04	3	CH_stu_575	4	9	0.0000753196
Solanum tuberosum	chr04	3	CH_stu_157	7	11	0.00000000000143274
Solanum tuberosum	chr05	3	CH_stu_532	4	8	0.0000419113
Solanum tuberosum	chr06	3	CH_stu_239	5	5	0.00000000118365
Solanum tuberosum	chr12	3	CH_stu_162	6	6	0.00000000000229141
Solanum tuberosum	chr04	4	CH_stu_77	14	300	0.0000000000540552
Solanum tuberosum	chr04	5	CH_stu_78	14	300	0.0000000000540552
Solanum tuberosum	chr04	6	CH_stu_102	14	300	0.0000000000663718
Thellungiella parvula	ch4-1	1	CH_tpa_13	7	21	0.0000000000868093
Thellungiella parvula	ch4-1	2	CH_tpa_22	7	21	0.0000000000868093
Thellungiella parvula	ch4-1	3	CH_tpa_26	7	21	0.0000000000868093
Theobroma cacao	scaffold_10r	1	CH_tca_288	3	4	0.000545864
Theobroma cacao	scaffold_2	1	CH_tca_149	4	5	0.00000109312
Theobroma cacao	scaffold_7	1	CH_tca_79	5	7	0.00000000718966
Theobroma cacao	scaffold_8	1	CH_tca_114	4	4	0.000000218906
Theobroma cacao	scaffold_10r	2	CH_tca_338	3	4	0.000545864
Theobroma cacao	scaffold_2	2	CH_tca_151	4	5	0.00000109312
Theobroma cacao	scaffold_7	2	CH_tca_85	5	7	0.00000000718966
Theobroma cacao	scaffold_10r	3	CH_tca_414	3	4	0.000579965
Theobroma cacao	scaffold_2	3	CH_tca_199	4	5	0.00000118612
Theobroma cacao	scaffold_7	3	CH_tca_118	5	7	0.00000000797069
Theobroma cacao	scaffold_7	4	CH_tca_22	11	91	0.000000000000141113
Theobroma cacao	scaffold_7	5	CH_tca_17	11	91	0.000000000000141113
Theobroma cacao	scaffold_7	6	CH_tca_27	11	91	0.000000000000172824
Vitis vinifera	chr3	1	CH_vvi_30	10	16	2.72147e-19
Vitis vinifera	chr8	1	CH_vvi_82	6	9	0.000000000203943
Vitis vinifera	chr11	2	CH_vvi_312	3	3	0.000275848
Vitis vinifera	chr3	2	CH_vvi_29	10	16	2.72147e-19
Vitis vinifera	chr8	2	CH_vvi_89	6	9	0.000000000203943
Vitis vinifera	chr11	3	CH_vvi_404	3	3	0.000305385
Vitis vinifera	chr3	3	CH_vvi_36	10	16	3.9045e-19
Vitis vinifera	chr8	3	CH_vvi_113	6	9	0.000000000251276
Vitis vinifera	chr3	4	CH_vvi_25	10	16	2.72147e-19
Vitis vinifera	chr3	5	CH_vvi_26	10	16	2.72147e-19
Vitis vinifera	chr3	6	CH_vvi_34	10	16	3.9045e-19
Zea mays	7	1	CH_zma_75	4	5	0.0000006501
Zea mays	7	2	CH_zma_75	4	5	0.0000006501
Zea mays	7	3	CH_zma_100	4	5	0.0000006501

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V