PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0004144
Description: diacylglycerol O-acyltransferase activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00007	1	CH_atr_179	2	2	0.000237107
Arabidopsis lyrata	scaffold_5	1	CH_aly_109	3	3	0.00000131553
Arabidopsis lyrata	scaffold_5	2	CH_aly_173	3	3	0.00000795295
Arabidopsis lyrata	scaffold_5	3	CH_aly_206	3	3	0.00000795295
Arabidopsis thaliana	3	1	CH_ath_169	3	3	0.00000361362
Arabidopsis thaliana	3	2	CH_ath_218	3	3	0.00000706782
Arabidopsis thaliana	3	3	CH_ath_226	3	3	0.00000706782
Beta vulgaris	Bvchr9.sca026	1	CH_bvu_111	3	3	0.00000509131
Beta vulgaris	Bvchr9.sca026	2	CH_bvu_149	3	3	0.0000186029
Beta vulgaris	Bvchr9.sca026	3	CH_bvu_190	3	3	0.0000247712
Brassica rapa	A03	1	CH_bra_75	3	3	0.00000421065
Brassica rapa	A03	2	CH_bra_143	3	3	0.000020152
Brassica rapa	A03	3	CH_bra_174	3	3	0.000020152
Capsella rubella	scaffold_2	1	CH_cru_129	3	4	0.0000127186
Capsella rubella	scaffold_5	1	CH_cru_112	3	3	0.00000318078
Capsella rubella	scaffold_2	2	CH_cru_225	3	4	0.0000803397
Capsella rubella	scaffold_5	2	CH_cru_184	3	3	0.0000200984
Capsella rubella	scaffold_2	3	CH_cru_260	3	4	0.0000803397
Capsella rubella	scaffold_5	3	CH_cru_219	3	3	0.0000200984
Carica papaya	supercontig_3	1	CH_cpa_72	3	7	0.00000989053
Carica papaya	supercontig_3	2	CH_cpa_112	3	7	0.0000815375
Carica papaya	supercontig_3	3	CH_cpa_63	4	7	0.0000000475132
Cucumis melo	CM3.5_scaffold00034	1	CH_cme_34	5	12	0.00000000000122326
Cucumis melo	CM3.5_scaffold00034	2	CH_cme_40	5	12	0.000000000094086
Cucumis melo	CM3.5_scaffold00034	3	CH_cme_60	5	12	0.000000000094086
Eucalyptus grandis	scaffold_8	1	CH_egr_97	6	9	2.70204e-16
Eucalyptus grandis	scaffold_8	2	CH_egr_182	6	9	0.000000000000295877
Eucalyptus grandis	scaffold_8	3	CH_egr_207	6	9	0.000000000000295877
Glycine max	Gm06	1	CH_gma_198	3	6	0.0000117407
Glycine max	Gm06	2	CH_gma_321	3	6	0.000134401
Glycine max	Gm06	3	CH_gma_83	5	7	0.0000000000420358
Gossypium raimondii	Chr12	1	CH_gra_72	4	4	0.00000000022651
Gossypium raimondii	Chr12	2	CH_gra_95	4	4	0.00000000334731
Gossypium raimondii	Chr12	3	CH_gra_118	4	4	0.00000000334731
Manihot esculenta	scaffold10217	1	CH_mes_22	4	4	0.0000000000897891
Manihot esculenta	scaffold10217	2	CH_mes_35	4	4	0.00000000466904
Manihot esculenta	scaffold10217	3	CH_mes_48	4	4	0.00000000466904
Medicago truncatula	chr4	1	CH_mtr_17	10	43	2.6125e-24
Medicago truncatula	chr4	2	CH_mtr_26	10	43	1.06198e-21
Medicago truncatula	chr4	3	CH_mtr_38	10	43	1.72492e-21
Medicago truncatula	chr4	4	CH_mtr_19	10	43	2.6125e-24
Medicago truncatula	chr4	5	CH_mtr_28	10	43	1.06198e-21
Medicago truncatula	chr4	6	CH_mtr_42	10	43	1.72492e-21
Oryza sativa ssp. japonica	1	1	CH_osa_319	2	2	0.000214091
Populus trichocarpa	Chr19	1	CH_ptr_110	4	4	0.000000000882007
Populus trichocarpa	Chr19	2	CH_ptr_156	4	4	0.0000000171865
Populus trichocarpa	Chr19	3	CH_ptr_200	4	4	0.0000000194042
Prunus persica	scaffold_7	1	CH_ppe_236	3	4	0.0000254306
Prunus persica	scaffold_8	1	CH_ppe_125	4	6	0.0000000515388
Prunus persica	scaffold_9	1	CH_ppe_89	6	33	0.00000000089091
Prunus persica	scaffold_7	2	CH_ppe_273	3	4	0.0000716657
Prunus persica	scaffold_8	2	CH_ppe_163	4	6	0.000000212975
Prunus persica	scaffold_9	2	CH_ppe_124	6	33	0.00000000844974
Prunus persica	scaffold_7	3	CH_ppe_368	3	4	0.0000810112
Prunus persica	scaffold_8	3	CH_ppe_104	5	6	0.0000000000798899
Prunus persica	scaffold_9	3	CH_ppe_153	6	33	0.0000000109755
Ricinus communis	29983	1	CH_rco_36	4	4	0.00000000019888
Ricinus communis	29983	2	CH_rco_44	4	4	0.00000000203142
Ricinus communis	29983	3	CH_rco_64	4	4	0.00000000203142
Solanum lycopersicum	ch01	1	CH_sly_217	3	4	0.0000032583
Solanum lycopersicum	ch01	2	CH_sly_251	3	4	0.00000898423
Solanum lycopersicum	ch01	3	CH_sly_339	3	4	0.0000110573
Solanum tuberosum	chr01	1	CH_stu_144	4	4	0.000000000182695
Solanum tuberosum	chr01	2	CH_stu_179	4	4	0.00000000131762
Solanum tuberosum	chr01	3	CH_stu_242	4	4	0.00000000131762
Thellungiella parvula	ch5-1	1	CH_tpa_51	3	3	0.00000156311
Thellungiella parvula	ch5-6	1	CH_tpa_50	3	3	0.00000156311
Thellungiella parvula	ch5-1	2	CH_tpa_93	3	3	0.00000773029
Thellungiella parvula	ch5-1	3	CH_tpa_110	3	3	0.00000773029
Vitis vinifera	chr15	1	CH_vvi_4	14	16	2.14529e-42
Vitis vinifera	chr15	2	CH_vvi_4	14	16	2.57701e-39
Vitis vinifera	chr15	3	CH_vvi_4	16	16	1.82529e-47
Vitis vinifera	chr15	4	CH_vvi_4	14	16	2.14529e-42
Vitis vinifera	chr15	5	CH_vvi_5	14	16	2.57701e-39
Vitis vinifera	chr15	6	CH_vvi_6	16	16	1.82529e-47

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V