Monocots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
PH01000258G0390	Phyllostachys edulis	HOM04x5M001523	ORTHO04x5M001589	8.4e-212	738.8	385	100.0
OB05G13160	Oryza brachyantha	HOM04x5M001523	ORTHO04x5M001589	9.1e-41	170.6	147	66.0
Pgl_GLEAN_10003497	Cenchrus americanus	HOM04x5M001523	ORTHO04x5M001589	1.2e-40	170.2	129	73.6
Seita.3G038900	Setaria italica	HOM04x5M001523	ORTHO04x5M001589	2.5e-38	162.5	150	64.7
Misin17G049700	Miscanthus sinensis	HOM04x5M001523	ORTHO04x5M001589	9.4e-38	160.6	150	64.7
Sspon.07G0013220-2B	Saccharum spontaneum	HOM04x5M001523	ORTHO04x5M001589	9.4e-38	160.6	150	64.7
Sspon.07G0013220-1T	Saccharum spontaneum	HOM04x5M001523	ORTHO04x5M001589	9.4e-38	160.6	150	64.7
LP007813	Lolium perenne	HOM04x5M001523	ORTHO04x5M001589	1.2e-37	160.2	148	64.2
Misin16G054100	Miscanthus sinensis	HOM04x5M001523	ORTHO04x5M001589	2.1e-37	159.5	148	64.9
Bradi2g36005	Brachypodium distachyon	HOM04x5M001523	ORTHO04x5M001589	3.6e-37	158.7	150	64.0
TraesCS1D02G093800	Triticum aestivum	HOM04x5M001523	ORTHO04x5M001589	1.5e-35	153.3	142	65.5
TraesCS1B02G112600	Triticum aestivum	HOM04x5M001523	ORTHO04x5M001589	1.5e-35	153.3	142	65.5
TRITD1Bv1G044830	Triticum turgidum	HOM04x5M001523	ORTHO04x5M001589	1.5e-35	153.3	142	65.5
TraesCS1A02G102200	Triticum aestivum	HOM04x5M001523	ORTHO04x5M001589	4.4e-35	151.8	139	65.5
TRITD1Av1G041990	Triticum turgidum	HOM04x5M001523	ORTHO04x5M001589	4.4e-35	151.8	139	65.5
Sobic.009G042800	Sorghum bicolor	HOM04x5M001523	ORTHO04x5M001589	2.4e-33	146.0	150	61.3
LOC_Os05g05580	Oryza sativa ssp. japonica	HOM04x5M001523	ORTHO04x5M001589	1.7e-26	123.2	105	68.6
Sspon.07G0013220-1A	Saccharum spontaneum	HOM04x5M001523	ORTHO04x5M001589	1.7e-26	123.2	87	80.5
Zm00007a00006561	Zea mays B104	HOM04x5M001523	ORTHO04x5M001589	1.8e-25	119.8	150	54.0
Sspon.07G0013220-3D	Saccharum spontaneum	HOM04x5M001523	ORTHO04x5M001589	9.1e-25	117.5	162	49.4
Zm00001d024833	Zea mays B73	HOM04x5M001523	ORTHO04x5M001589	1.1e-22	110.5	108	63.9
Zm00008a037492	Zea mays PH207	HOM04x5M001523	ORTHO04x5M001589	1.1e-22	110.5	108	63.9
Oropetium_20150105_15532	Oropetium thomaeum	HOM04x5M001523	ORTHO04x5M001589	1.8e-20	103.2	108	63.0
Pp3c19_10380	Physcomitrium patens	HOM04x5M001523	ORTHO04x5M001589	1.0e-07	60.8	145	29.7

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment