Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
PP00463G00030	Physcomitrella patens	0.0	826	403	100.00
PP00001G00040	Physcomitrella patens	0.0	826	403	100.00
PP00463G00080	Physcomitrella patens	0.0	826	403	100.00
PP00463G00020	Physcomitrella patens	0.0	794	403	96.77
PP00022G00030	Physcomitrella patens	0.0	776	399	95.49
PP00426G00300	Physcomitrella patens	0.0	776	389	96.92
PP00500G00010	Physcomitrella patens	0.0	776	389	96.92
PP00365G00060	Physcomitrella patens	0.0	746	414	91.55
PP00365G00070	Physcomitrella patens	0.0	746	414	91.55
PP00039G01580	Physcomitrella patens	0.0	744	403	91.56
PP00303G00010	Physcomitrella patens	0.0	741	414	91.06
PP00292G00010	Physcomitrella patens	0.0	741	414	91.06
PP00303G00020	Physcomitrella patens	0.0	741	414	91.06
PP00228G00140	Physcomitrella patens	0.0	694	404	86.63
PP00425G00040	Physcomitrella patens	0.0	621	399	83.21
AT5G13930	Arabidopsis thaliana	0.0	517	389	64.27
OS11G32650	Oryza sativa	2e-179	513	387	63.05
PP00020G01380	Physcomitrella patens	2e-176	501	284	86.27
ATR_00039G00300	Amborella trichopoda	7e-176	503	384	62.76
PP00025G01780	Physcomitrella patens	2e-165	477	383	58.75
PP00016G01990	Physcomitrella patens	2e-160	458	228	98.25
OS07G11440	Oryza sativa	4e-155	451	380	56.84
ATR_00102G00470	Amborella trichopoda	2e-146	429	382	53.66
ATR_00102G00480	Amborella trichopoda	2e-122	366	383	47.52
OS10G07616	Oryza sativa	1e-116	352	380	46.58
OS10G07040	Oryza sativa	5e-115	348	380	46.32
OS11G35930	Oryza sativa	6e-115	348	381	45.14
OS04G01354	Oryza sativa	7e-114	345	372	47.04
OS10G08620	Oryza sativa	2e-112	342	392	45.66
OS05G12240	Oryza sativa	5e-112	340	391	45.52
OS05G12180	Oryza sativa	3e-110	336	376	45.74
PP00025G01790	Physcomitrella patens	1e-109	335	383	43.08
OS07G17010	Oryza sativa	3e-109	333	387	46.77
OS07G31770	Oryza sativa	4e-108	331	382	45.03
OS05G12210	Oryza sativa	5e-107	328	376	44.68
PP00304G00330	Physcomitrella patens	3e-101	314	373	41.02
OS11G32620	Oryza sativa	6e-100	310	382	45.55
AT4G34850	Arabidopsis thaliana	7e-100	309	376	42.29
OS07G34140	Oryza sativa	1e-99	309	380	43.42
OS11G32610	Oryza sativa	1e-97	304	378	45.50
OS11G32580	Oryza sativa	4e-95	298	387	44.96
OS07G31750	Oryza sativa	4e-94	296	434	38.71
AT4G00040	Arabidopsis thaliana	7e-93	291	374	40.11
ATR_00111G00150	Amborella trichopoda	5e-92	289	369	40.38
OS07G34190	Oryza sativa	5e-92	289	383	43.34
OS04G23940	Oryza sativa	2e-89	281	332	43.67
OS01G41834	Oryza sativa	3e-89	282	389	43.19
OS07G34260	Oryza sativa	3e-88	280	389	42.67
OS07G22850	Oryza sativa	4e-88	280	400	39.00
OS10G09860	Oryza sativa	6e-88	278	391	41.94
AT1G02050	Arabidopsis thaliana	1e-86	275	374	41.44
OS10G34360	Oryza sativa	3e-83	266	388	38.92
OS10G08710	Oryza sativa	1e-82	261	299	45.82
ATR_00182G00320	Amborella trichopoda	1e-82	262	317	43.53
OS10G08670	Oryza sativa	6e-77	248	391	38.11
OS05G12190	Oryza sativa	1e-66	221	374	36.10
PP00020G01420	Physcomitrella patens	4e-65	210	115	91.30
PP00061G00300	Physcomitrella patens	1e-64	220	398	34.17
PP00034G01170	Physcomitrella patens	3e-64	219	373	36.19
OS11G32540	Oryza sativa	8e-58	194	256	42.97
PP00038G00040	Physcomitrella patens	9e-48	174	355	34.08
DDB_G0269364	Dictyostelium discoideum	3e-46	177	389	31.62
ES0046G00500	Ectocarpus siliculosus	3e-31	126	289	30.45
ES0024G00160	Ectocarpus siliculosus	9e-30	123	353	28.61
CV00G35920	Coccomyxa subellipsoidea C-169	5e-29	122	304	30.59
OS12G07690	Oryza sativa	3e-27	110	138	43.48
ES0110G00100	Ectocarpus siliculosus	2e-26	112	246	32.52
ATR_00066G00730	Amborella trichopoda	1e-25	105	147	43.54
AA0007G03230	Aureococcus anophagefferens	2e-25	108	294	27.89
OS05G41645	Oryza sativa	9e-25	103	101	48.51
OS03G47000	Oryza sativa	6e-23	97.8	149	40.27
RCC4223.101g00290	Picochlorum_RCC4223	1e-22	100	307	24.43
DDB_G0290853	Dictyostelium discoideum	4e-22	103	288	26.74
PP00020G01410	Physcomitrella patens	3e-19	85.9	53	75.47
PP00020G01370	Physcomitrella patens	3e-19	85.9	53	75.47
OS10G36972	Oryza sativa	2e-12	68.6	60	53.33
OS04G02640	Oryza sativa	3e-11	68.9	256	25.78
CV00G74800	Coccomyxa subellipsoidea C-169	4e-11	68.2	406	23.89
PP00020G01440	Physcomitrella patens	5e-11	64.7	44	72.73
CV00G74580	Coccomyxa subellipsoidea C-169	1e-10	67.0	299	25.75
PP00035G00340	Physcomitrella patens	6e-10	64.7	286	25.17
ccr46180	Chondrus crispus	5e-09	62.0	260	24.62
CM04G01180	Cyanidioschyzon merolae	5e-09	62.0	251	23.90
PP00416G00040	Physcomitrella patens	1e-08	60.8	329	23.71
VC00G122550	Volvox carteri	1e-08	60.5	384	23.18
CV00G03540	Coccomyxa subellipsoidea C-169	2e-08	60.5	272	23.90
ATR_00079G01180	Amborella trichopoda	3e-08	59.3	305	21.31
HE0000G48860	Helicosporidium sp.	6e-08	58.5	253	24.51
RCC4223.19g00160	Picochlorum_RCC4223	9e-08	58.2	262	24.81
PI00G01930	Picochlorum sp. SENEW3 (SE3)	2e-07	57.0	262	24.81
CR17G05760	Chlamydomonas reinhardtii	2e-07	57.0	385	23.38
AT1G71160	Arabidopsis thaliana	2e-07	56.6	412	21.60
OS10G33370	Oryza sativa	2e-07	56.6	283	24.03
ES0069G00300	Ectocarpus siliculosus	2e-07	56.6	407	24.08
PP00066G00370	Physcomitrella patens	8e-07	55.1	349	20.06
OM_14G01220	Ostreococcus mediterraneus	9e-07	54.3	385	23.12
CV00G73450	Coccomyxa subellipsoidea C-169	2e-06	53.5	100	35.00
OS10G08680	Oryza sativa	2e-06	50.8	92	36.96
CNC64A_014G02190	Chlorella sp NC64A	2e-06	53.5	97	35.05
OS02G11070	Oryza sativa	3e-06	53.1	266	24.81
gsu87150	Galdieria sulphuraria	6e-06	52.4	411	20.68

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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