Pico-PLAZA 3.0 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
OS06G48200	Oryza sativa	0.0	610	291	100.00
OS06G48160	Oryza sativa	1e-143	413	289	68.51
AT5G57550	Arabidopsis thaliana	1e-141	408	291	65.64
AT4G25810	Arabidopsis thaliana	2e-140	404	287	64.11
AT5G57560	Arabidopsis thaliana	9e-136	393	285	63.16
AT3G23730	Arabidopsis thaliana	6e-133	386	286	61.54
ATR_00062G00050	Amborella trichopoda	1e-132	385	287	62.02
ATR_00062G00020	Amborella trichopoda	2e-129	377	287	62.37
AT4G30270	Arabidopsis thaliana	4e-128	372	286	59.09
AT4G14130	Arabidopsis thaliana	6e-128	373	282	62.06
OS06G48180	Oryza sativa	9e-128	372	286	61.19
ATR_00019G03570	Amborella trichopoda	1e-127	372	288	60.76
AT5G57530	Arabidopsis thaliana	3e-127	371	275	64.00
AT5G57540	Arabidopsis thaliana	3e-124	363	270	63.70
ATR_00065G01750	Amborella trichopoda	2e-123	362	291	59.11
ATR_00019G03590	Amborella trichopoda	4e-123	362	304	54.61
ATR_00065G01770	Amborella trichopoda	6e-122	358	289	58.13
AT2G18800	Arabidopsis thaliana	6e-121	356	296	55.74
AT5G48070	Arabidopsis thaliana	7e-120	352	290	55.52
AT4G25820	Arabidopsis thaliana	1e-119	352	283	60.42
AT4G30280	Arabidopsis thaliana	6e-110	327	290	55.52
AT4G30290	Arabidopsis thaliana	3e-109	325	287	55.75
OS04G51460	Oryza sativa	3e-109	325	288	53.47
AT1G65310	Arabidopsis thaliana	5e-109	325	278	58.27
OS04G51520	Oryza sativa	2e-99	301	280	50.36
OS06G48170	Oryza sativa	4e-98	297	272	50.37
OS04G51450	Oryza sativa	4e-98	298	265	53.21
PP00168G00050	Physcomitrella patens	4e-96	293	290	49.66
OS08G14200	Oryza sativa	3e-95	290	295	47.80
ATR_00453G00010	Amborella trichopoda	4e-95	291	284	47.54
AT4G03210	Arabidopsis thaliana	1e-94	288	289	47.40
OS11G33270	Oryza sativa	7e-93	284	272	50.37
ATR_00016G02940	Amborella trichopoda	1e-92	283	272	51.47
AT5G13870	Arabidopsis thaliana	2e-92	283	272	50.37
PP00168G00160	Physcomitrella patens	1e-91	281	281	49.82
AT4G28850	Arabidopsis thaliana	3e-91	279	290	46.90
OS08G14210	Oryza sativa	5e-91	281	293	46.76
PP00004G00240	Physcomitrella patens	1e-90	278	290	49.31
PP00309G00230	Physcomitrella patens	2e-90	278	293	46.42
AT5G65730	Arabidopsis thaliana	4e-90	276	286	46.15
AT2G06850	Arabidopsis thaliana	9e-90	276	298	47.32
ATR_00026G01070	Amborella trichopoda	1e-89	275	283	47.35
ATR_00019G03550	Amborella trichopoda	6e-88	271	289	45.33
ATR_00026G01160	Amborella trichopoda	1e-87	270	294	43.88
ATR_00062G00060	Amborella trichopoda	1e-87	267	206	61.65
OS08G13920	Oryza sativa	3e-87	269	274	49.64
AT2G14620	Arabidopsis thaliana	6e-87	269	289	44.29
PP00004G00260	Physcomitrella patens	3e-86	267	294	44.22
OS08G13980	Oryza sativa	1e-85	265	281	50.53
PP00026G00650	Physcomitrella patens	1e-84	263	261	48.28
OS02G17900	Oryza sativa	2e-84	262	278	46.40
PP00309G00220	Physcomitrella patens	3e-84	262	260	47.31
AT1G11545	Arabidopsis thaliana	5e-83	259	298	44.63
OS02G17880	Oryza sativa	1e-82	258	275	48.00
OS06G22919	Oryza sativa	1e-82	258	285	47.02
AT4G37800	Arabidopsis thaliana	3e-82	256	288	43.06
ATR_00004G02430	Amborella trichopoda	1e-81	255	299	44.15
OS07G34580	Oryza sativa	8e-81	253	278	49.28
PP00272G00150	Physcomitrella patens	3e-80	251	280	45.71
PP00195G00150	Physcomitrella patens	4e-80	251	275	46.55
PP00309G00140	Physcomitrella patens	1e-79	250	292	43.15
AT4G13090	Arabidopsis thaliana	4e-78	246	296	43.58
PP00193G00050	Physcomitrella patens	3e-77	245	257	45.53
PP00291G00470	Physcomitrella patens	2e-76	243	256	44.53
AT3G25050	Arabidopsis thaliana	2e-75	239	272	43.75
PP00618G00010	Physcomitrella patens	2e-74	240	256	44.53
AT4G13080	Arabidopsis thaliana	2e-72	231	272	41.54
ATR_00026G01110	Amborella trichopoda	9e-69	219	227	46.70
OS04G51510	Oryza sativa	1e-68	220	279	43.37
PP00213G00650	Physcomitrella patens	8e-68	219	257	42.80
AT2G36870	Arabidopsis thaliana	3e-67	218	286	43.36
PP00410G00130	Physcomitrella patens	2e-65	213	296	39.19
PP00309G00200	Physcomitrella patens	3e-65	211	238	47.90
ATR_00026G01130	Amborella trichopoda	9e-65	208	166	54.82
ATR_00109G01360	Amborella trichopoda	1e-64	208	206	48.54
PP00156G00440	Physcomitrella patens	2e-64	211	296	39.19
PP00156G00420	Physcomitrella patens	2e-64	211	296	39.19
ATR_00019G03580	Amborella trichopoda	4e-64	205	149	59.73
PP00122G00290	Physcomitrella patens	8e-64	209	255	42.35
OS03G01800	Oryza sativa	1e-63	209	284	41.20
AT3G44990	Arabidopsis thaliana	1e-62	206	286	40.56
OS06G13040	Oryza sativa	6e-61	202	273	42.86
OS07G29750	Oryza sativa	1e-60	201	308	39.61
OS10G39840	Oryza sativa	2e-59	198	276	39.86
OS02G57770	Oryza sativa	4e-59	198	295	41.36
ATR_00082G00420	Amborella trichopoda	6e-59	196	271	42.07
PP00486G00100	Physcomitrella patens	3e-57	192	250	42.00
PP00486G00080	Physcomitrella patens	3e-57	192	250	42.00
PP00081G01240	Physcomitrella patens	8e-57	191	290	38.62
AT1G32170	Arabidopsis thaliana	2e-55	189	294	35.37
PP00019G00220	Physcomitrella patens	5e-54	184	263	38.78
OS10G02770	Oryza sativa	1e-53	184	276	35.51
ATR_00013G00910	Amborella trichopoda	2e-53	179	236	38.56
AT1G14720	Arabidopsis thaliana	4e-53	182	273	36.26
PP00011G01530	Physcomitrella patens	5e-53	181	311	34.73
AT1G10550	Arabidopsis thaliana	7e-53	181	263	36.50
PP00141G00620	Physcomitrella patens	2e-52	179	291	39.52
ATR_00024G00080	Amborella trichopoda	1e-51	178	284	34.51
PP00005G00910	Physcomitrella patens	4e-51	179	264	36.36
AT2G01850	Arabidopsis thaliana	5e-51	177	297	33.33
PP00048G00500	Physcomitrella patens	9e-51	176	278	36.69
PP00089G00910	Physcomitrella patens	8e-50	172	284	37.32
OS03G13570	Oryza sativa	2e-49	173	294	33.67
PP00074G00080	Physcomitrella patens	3e-49	175	264	36.74
OS02G03550	Oryza sativa	3e-49	172	273	36.26
OS09G23220	Oryza sativa	6e-48	169	275	34.55
AT4G18990	Arabidopsis thaliana	8e-47	166	277	34.30
ATR_00026G01150	Amborella trichopoda	2e-46	159	172	45.93
PP00346G00070	Physcomitrella patens	3e-46	165	281	36.65
OS03G63760	Oryza sativa	9e-44	158	287	33.45
ATR_00048G00580	Amborella trichopoda	2e-43	156	238	35.29
AT3G48580	Arabidopsis thaliana	1e-42	153	263	33.84
OS02G46910	Oryza sativa	3e-42	154	304	32.89
ATR_00337G00020	Amborella trichopoda	4e-39	139	98	67.35
ATR_00062G00010	Amborella trichopoda	9e-37	135	88	73.86
PP00089G00960	Physcomitrella patens	2e-35	134	154	44.16
OS10G42670	Oryza sativa	5e-35	134	287	30.31
ATR_00062G00030	Amborella trichopoda	7e-28	109	115	48.70
ATR_00055G01550	Amborella trichopoda	4e-20	88.2	128	38.28
ATR_00069G00950	Amborella trichopoda	5e-19	87.8	211	28.91
PP00353G00180	Physcomitrella patens	5e-18	85.1	132	37.88
PP00037G01500	Physcomitrella patens	6e-18	87.8	174	31.61
PP00002G02710	Physcomitrella patens	2e-17	79.7	76	52.63
ATR_00004G02620	Amborella trichopoda	8e-17	78.2	71	47.89
ATR_00065G01730	Amborella trichopoda	9e-16	75.1	54	59.26
ATR_01729G00020	Amborella trichopoda	2e-15	73.9	64	53.12
PP00024G01140	Physcomitrella patens	6e-15	78.6	171	25.15
OS03G02610	Oryza sativa	3e-13	72.4	185	33.51
YLR213C	Saccharomyces cerevisiae strain S288C	3e-12	70.5	194	30.41
ATR_00065G01780	Amborella trichopoda	1e-10	61.6	89	37.08
OS04G53950	Oryza sativa	2e-09	61.2	68	44.12

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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