Pico-PLAZA 3.0 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
ATR_00026G01110	Amborella trichopoda	9e-161	450	214	100.00
ATR_00026G01160	Amborella trichopoda	1e-151	430	214	94.39
AT5G65730	Arabidopsis thaliana	2e-127	368	211	79.15
ATR_00019G03550	Amborella trichopoda	5e-127	367	214	78.50
AT4G37800	Arabidopsis thaliana	1e-125	364	214	77.10
ATR_00026G01130	Amborella trichopoda	4e-119	343	173	94.22
ATR_00026G01150	Amborella trichopoda	3e-111	322	164	93.29
AT5G13870	Arabidopsis thaliana	1e-86	265	210	56.19
PP00004G00260	Physcomitrella patens	6e-86	263	211	53.55
ATR_00016G02940	Amborella trichopoda	1e-85	262	210	55.24
OS11G33270	Oryza sativa	2e-85	261	211	55.45
AT4G03210	Arabidopsis thaliana	5e-85	260	212	57.08
PP00309G00220	Physcomitrella patens	3e-84	259	211	53.55
AT2G06850	Arabidopsis thaliana	1e-82	254	210	55.71
PP00309G00230	Physcomitrella patens	1e-80	249	212	52.83
PP00004G00240	Physcomitrella patens	2e-79	246	212	53.30
PP00168G00160	Physcomitrella patens	1e-78	244	214	51.87
PP00168G00050	Physcomitrella patens	4e-77	241	211	51.66
PP00272G00150	Physcomitrella patens	2e-76	238	214	49.53
AT3G23730	Arabidopsis thaliana	4e-76	238	214	52.34
ATR_00062G00020	Amborella trichopoda	5e-76	237	213	52.11
ATR_00062G00050	Amborella trichopoda	6e-76	237	210	51.90
AT4G30290	Arabidopsis thaliana	2e-75	236	211	52.61
ATR_00453G00010	Amborella trichopoda	2e-75	237	217	50.23
AT5G57550	Arabidopsis thaliana	3e-75	235	211	53.08
PP00195G00150	Physcomitrella patens	4e-75	236	220	50.91
AT2G14620	Arabidopsis thaliana	4e-75	235	212	52.83
PP00026G00650	Physcomitrella patens	1e-74	234	212	50.00
PP00309G00140	Physcomitrella patens	2e-74	234	209	49.76
AT4G14130	Arabidopsis thaliana	3e-74	233	211	52.13
AT5G48070	Arabidopsis thaliana	3e-74	232	211	50.24
AT5G57560	Arabidopsis thaliana	4e-74	232	219	50.68
ATR_00019G03570	Amborella trichopoda	5e-74	232	210	53.81
ATR_00026G01070	Amborella trichopoda	6e-74	231	212	51.89
ATR_00004G02430	Amborella trichopoda	8e-74	232	213	52.11
AT4G30270	Arabidopsis thaliana	1e-73	231	210	53.33
AT1G11545	Arabidopsis thaliana	1e-73	231	217	52.07
AT4G25810	Arabidopsis thaliana	2e-73	231	217	51.61
OS06G48160	Oryza sativa	8e-73	229	226	48.23
AT5G57530	Arabidopsis thaliana	2e-72	228	214	50.93
AT4G30280	Arabidopsis thaliana	2e-72	228	211	50.24
ATR_00019G03590	Amborella trichopoda	3e-72	228	230	48.70
AT1G65310	Arabidopsis thaliana	2e-71	225	212	50.00
PP00291G00470	Physcomitrella patens	2e-70	224	214	49.53
AT5G57540	Arabidopsis thaliana	2e-70	223	214	50.00
OS06G48180	Oryza sativa	3e-69	220	213	49.30
OS07G34580	Oryza sativa	5e-69	220	216	52.31
PP00193G00050	Physcomitrella patens	9e-69	221	215	48.37
AT4G13090	Arabidopsis thaliana	6e-68	217	213	49.77
PP00618G00010	Physcomitrella patens	8e-68	220	214	49.07
OS06G48200	Oryza sativa	2e-67	216	226	46.02
ATR_00065G01750	Amborella trichopoda	7e-67	214	225	45.78
ATR_00062G00060	Amborella trichopoda	3e-66	209	183	53.01
AT4G25820	Arabidopsis thaliana	4e-66	212	214	48.60
AT4G28850	Arabidopsis thaliana	6e-66	211	215	47.91
AT3G25050	Arabidopsis thaliana	7e-66	211	214	47.20
ATR_00065G01770	Amborella trichopoda	1e-65	211	223	46.64
OS06G48170	Oryza sativa	1e-65	211	215	46.05
OS04G51520	Oryza sativa	7e-65	209	225	44.89
AT2G18800	Arabidopsis thaliana	1e-64	209	226	47.35
AT4G13080	Arabidopsis thaliana	9e-64	206	209	46.41
OS04G51460	Oryza sativa	2e-63	205	211	46.92
OS08G14200	Oryza sativa	2e-63	204	214	49.07
ATR_00109G01360	Amborella trichopoda	7e-63	201	179	51.96
OS04G51450	Oryza sativa	1e-58	193	213	45.07
OS08G14210	Oryza sativa	1e-58	195	215	46.98
OS06G13040	Oryza sativa	1e-57	190	217	46.54
OS08G13980	Oryza sativa	8e-57	188	217	46.54
PP00213G00650	Physcomitrella patens	4e-56	186	216	43.52
PP00011G01530	Physcomitrella patens	4e-56	187	220	44.09
OS08G13920	Oryza sativa	1e-55	185	217	41.47
OS06G22919	Oryza sativa	1e-54	183	233	41.20
ATR_00013G00910	Amborella trichopoda	7e-54	178	215	44.19
PP00309G00200	Physcomitrella patens	2e-53	177	216	43.06
PP00156G00440	Physcomitrella patens	3e-53	179	213	41.78
PP00156G00420	Physcomitrella patens	3e-53	179	213	41.78
OS02G17880	Oryza sativa	3e-53	179	213	44.60
PP00074G00080	Physcomitrella patens	5e-53	182	213	43.19
PP00486G00100	Physcomitrella patens	5e-53	178	214	46.26
PP00486G00080	Physcomitrella patens	5e-53	178	214	46.26
AT1G32170	Arabidopsis thaliana	7e-52	176	215	44.65
PP00410G00130	Physcomitrella patens	1e-51	174	214	43.46
OS02G17900	Oryza sativa	9e-51	172	214	42.06
PP00122G00290	Physcomitrella patens	5e-50	171	215	42.79
ATR_00082G00420	Amborella trichopoda	4e-49	168	214	42.99
OS07G29750	Oryza sativa	8e-49	167	215	41.86
PP00005G00910	Physcomitrella patens	5e-48	169	213	42.25
PP00019G00220	Physcomitrella patens	5e-48	165	217	39.63
OS03G01800	Oryza sativa	1e-47	165	215	42.33
PP00081G01240	Physcomitrella patens	1e-47	164	215	42.79
OS10G02770	Oryza sativa	1e-47	165	217	40.55
OS02G57770	Oryza sativa	2e-47	165	215	40.00
ATR_00024G00080	Amborella trichopoda	1e-46	162	216	43.06
PP00141G00620	Physcomitrella patens	6e-46	160	214	41.59
ATR_00048G00580	Amborella trichopoda	2e-45	159	212	42.45
OS03G13570	Oryza sativa	2e-45	159	215	40.00
PP00048G00500	Physcomitrella patens	3e-44	156	222	42.79
OS10G39840	Oryza sativa	4e-44	155	216	40.28
PP00089G00910	Physcomitrella patens	8e-44	154	243	37.45
AT2G36870	Arabidopsis thaliana	2e-43	154	217	39.17
AT1G14720	Arabidopsis thaliana	2e-43	154	214	39.25
PP00346G00070	Physcomitrella patens	5e-43	154	225	40.00
AT1G10550	Arabidopsis thaliana	6e-43	152	222	36.04
OS02G03550	Oryza sativa	8e-43	153	220	42.27
OS04G51510	Oryza sativa	2e-42	150	213	38.97
AT3G44990	Arabidopsis thaliana	3e-42	150	214	38.79
AT4G18990	Arabidopsis thaliana	4e-42	151	227	39.21
AT2G01850	Arabidopsis thaliana	8e-42	150	212	40.09
OS03G63760	Oryza sativa	1e-38	142	224	37.05
OS09G23220	Oryza sativa	2e-38	140	211	37.44
PP00089G00960	Physcomitrella patens	1e-36	134	146	48.63
AT3G48580	Arabidopsis thaliana	3e-35	131	211	36.49
OS02G46910	Oryza sativa	1e-32	126	222	36.49
ATR_00019G03580	Amborella trichopoda	1e-30	116	83	60.24
OS10G42670	Oryza sativa	3e-30	119	215	37.21
ATR_00055G01550	Amborella trichopoda	8e-26	102	110	45.45
ATR_00062G00030	Amborella trichopoda	2e-18	82.0	100	42.00
PP00002G02710	Physcomitrella patens	3e-18	80.9	77	50.65
PP00024G01140	Physcomitrella patens	3e-17	84.3	122	40.16
PP00353G00180	Physcomitrella patens	3e-17	81.6	127	35.43
ATR_01729G00020	Amborella trichopoda	3e-17	77.8	63	53.97
ATR_00004G02620	Amborella trichopoda	9e-17	77.4	71	53.52
ATR_00069G00950	Amborella trichopoda	3e-13	69.7	119	34.45
ATR_00065G01730	Amborella trichopoda	6e-13	66.2	75	45.33
OS03G02610	Oryza sativa	6e-13	70.1	119	36.97
PP00037G01500	Physcomitrella patens	2e-12	69.7	143	28.67

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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