Pico-PLAZA 3.0 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT5G57550	Arabidopsis thaliana	0.0	596	285	100.00
AT4G25810	Arabidopsis thaliana	2e-145	417	284	67.61
AT5G57560	Arabidopsis thaliana	4e-145	416	284	66.90
OS06G48200	Oryza sativa	2e-139	402	273	68.86
AT4G30270	Arabidopsis thaliana	5e-137	395	272	65.81
AT5G48070	Arabidopsis thaliana	8e-134	387	281	62.63
ATR_00062G00050	Amborella trichopoda	5e-132	383	276	65.94
ATR_00062G00020	Amborella trichopoda	3e-130	379	281	65.48
AT3G23730	Arabidopsis thaliana	2e-129	377	284	60.92
AT4G14130	Arabidopsis thaliana	3e-128	374	274	63.50
ATR_00019G03570	Amborella trichopoda	3e-128	373	281	63.70
AT2G18800	Arabidopsis thaliana	2e-127	372	296	59.80
OS06G48180	Oryza sativa	3e-127	371	273	61.17
OS06G48160	Oryza sativa	1e-126	370	283	59.72
AT1G65310	Arabidopsis thaliana	4e-123	360	259	65.25
AT5G57530	Arabidopsis thaliana	4e-123	360	262	64.12
AT4G30290	Arabidopsis thaliana	8e-123	359	283	60.78
AT5G57540	Arabidopsis thaliana	1e-122	359	260	63.85
ATR_00019G03590	Amborella trichopoda	1e-122	360	275	61.45
AT4G30280	Arabidopsis thaliana	2e-122	358	259	64.86
AT4G25820	Arabidopsis thaliana	4e-121	355	260	66.15
ATR_00065G01750	Amborella trichopoda	3e-109	325	293	55.97
ATR_00065G01770	Amborella trichopoda	1e-108	324	300	54.00
OS04G51460	Oryza sativa	8e-105	313	274	54.01
AT5G13870	Arabidopsis thaliana	9e-96	291	284	50.35
ATR_00016G02940	Amborella trichopoda	1e-95	290	257	53.31
OS06G48170	Oryza sativa	4e-95	290	258	49.22
OS08G14200	Oryza sativa	1e-94	288	277	50.18
ATR_00019G03550	Amborella trichopoda	2e-94	287	260	53.08
OS04G51450	Oryza sativa	5e-94	287	251	54.18
OS04G51520	Oryza sativa	7e-94	287	277	49.46
PP00168G00050	Physcomitrella patens	3e-93	285	277	48.74
ATR_00026G01160	Amborella trichopoda	3e-93	284	283	47.70
OS11G33270	Oryza sativa	1e-92	283	258	52.71
OS08G14210	Oryza sativa	2e-92	285	265	50.19
OS08G13920	Oryza sativa	2e-90	277	262	51.53
AT2G06850	Arabidopsis thaliana	5e-90	276	287	48.78
AT5G65730	Arabidopsis thaliana	9e-90	275	286	46.50
AT4G28850	Arabidopsis thaliana	3e-89	274	282	47.52
AT4G37800	Arabidopsis thaliana	7e-88	271	282	46.10
AT4G03210	Arabidopsis thaliana	2e-87	269	284	46.13
ATR_00062G00060	Amborella trichopoda	3e-87	266	191	67.54
AT2G14620	Arabidopsis thaliana	1e-86	268	291	45.36
PP00309G00220	Physcomitrella patens	6e-84	261	282	46.10
ATR_00026G01070	Amborella trichopoda	6e-84	260	267	47.94
PP00004G00260	Physcomitrella patens	1e-83	261	287	44.95
PP00309G00230	Physcomitrella patens	2e-83	259	289	44.64
PP00004G00240	Physcomitrella patens	7e-82	255	270	48.15
ATR_00453G00010	Amborella trichopoda	8e-81	254	284	44.01
OS08G13980	Oryza sativa	2e-80	252	260	48.08
PP00168G00160	Physcomitrella patens	3e-80	251	262	47.33
PP00309G00140	Physcomitrella patens	3e-80	251	279	45.16
AT4G13090	Arabidopsis thaliana	4e-80	251	291	45.02
PP00026G00650	Physcomitrella patens	5e-80	251	245	49.80
AT1G11545	Arabidopsis thaliana	8e-80	250	283	45.58
PP00272G00150	Physcomitrella patens	2e-79	248	239	49.37
ATR_00004G02430	Amborella trichopoda	8e-79	248	289	43.60
OS07G34580	Oryza sativa	1e-78	248	265	49.43
OS02G17900	Oryza sativa	7e-77	242	264	46.21
AT4G13080	Arabidopsis thaliana	9e-76	239	257	45.14
PP00195G00150	Physcomitrella patens	3e-75	239	278	43.88
ATR_00026G01110	Amborella trichopoda	4e-75	235	211	53.08
OS02G17880	Oryza sativa	8e-74	234	265	46.42
ATR_00026G01130	Amborella trichopoda	4e-73	229	181	58.56
AT3G25050	Arabidopsis thaliana	7e-73	232	286	42.66
OS06G22919	Oryza sativa	5e-72	231	286	41.96
PP00193G00050	Physcomitrella patens	2e-71	230	292	40.41
PP00291G00470	Physcomitrella patens	3e-71	229	249	42.97
PP00618G00010	Physcomitrella patens	9e-69	225	291	39.52
ATR_00109G01360	Amborella trichopoda	6e-65	209	193	51.30
PP00213G00650	Physcomitrella patens	2e-64	211	251	43.03
OS04G51510	Oryza sativa	3e-64	209	263	44.11
ATR_00019G03580	Amborella trichopoda	4e-64	205	134	67.16
OS06G13040	Oryza sativa	2e-62	206	265	44.15
PP00122G00290	Physcomitrella patens	1e-61	203	246	43.09
OS03G01800	Oryza sativa	2e-59	198	263	40.68
PP00309G00200	Physcomitrella patens	2e-59	195	228	45.18
PP00156G00440	Physcomitrella patens	3e-59	197	245	41.22
PP00156G00420	Physcomitrella patens	3e-59	197	245	41.22
PP00410G00130	Physcomitrella patens	1e-58	195	286	36.71
AT2G36870	Arabidopsis thaliana	2e-58	195	259	42.08
PP00019G00220	Physcomitrella patens	1e-56	190	251	41.43
ATR_00013G00910	Amborella trichopoda	2e-56	187	221	40.72
ATR_00082G00420	Amborella trichopoda	2e-56	190	252	42.06
AT3G44990	Arabidopsis thaliana	3e-55	186	291	38.14
OS07G29750	Oryza sativa	2e-54	185	263	39.16
AT1G32170	Arabidopsis thaliana	9e-54	184	296	35.81
OS02G57770	Oryza sativa	1e-53	183	245	42.04
ATR_00026G01150	Amborella trichopoda	1e-53	178	150	56.67
PP00486G00100	Physcomitrella patens	3e-53	181	241	40.66
PP00486G00080	Physcomitrella patens	3e-53	181	241	40.66
PP00081G01240	Physcomitrella patens	7e-53	180	240	41.25
PP00005G00910	Physcomitrella patens	2e-52	183	293	34.81
OS10G39840	Oryza sativa	2e-52	179	263	37.26
ATR_00024G00080	Amborella trichopoda	1e-51	178	263	37.26
AT2G01850	Arabidopsis thaliana	3e-51	177	291	34.36
OS10G02770	Oryza sativa	5e-51	177	264	35.98
AT1G14720	Arabidopsis thaliana	8e-51	176	259	38.22
PP00011G01530	Physcomitrella patens	3e-50	174	294	34.69
AT1G10550	Arabidopsis thaliana	5e-50	174	261	37.93
PP00141G00620	Physcomitrella patens	3e-49	171	237	41.35
PP00074G00080	Physcomitrella patens	9e-49	173	293	33.45
PP00089G00910	Physcomitrella patens	4e-48	168	255	38.43
OS03G13570	Oryza sativa	2e-47	167	291	33.33
OS03G63760	Oryza sativa	2e-46	166	283	35.34
OS02G03550	Oryza sativa	4e-46	164	246	37.40
OS09G23220	Oryza sativa	1e-45	162	264	35.23
AT4G18990	Arabidopsis thaliana	1e-45	163	284	34.15
PP00048G00500	Physcomitrella patens	2e-43	156	269	36.43
AT3G48580	Arabidopsis thaliana	2e-43	155	257	34.24
ATR_00048G00580	Amborella trichopoda	4e-43	155	226	38.05
PP00346G00070	Physcomitrella patens	4e-41	151	268	38.06
OS02G46910	Oryza sativa	6e-39	145	292	33.90
PP00089G00960	Physcomitrella patens	5e-37	137	152	45.39
OS10G42670	Oryza sativa	7e-37	139	279	32.97
ATR_00337G00020	Amborella trichopoda	4e-34	126	91	67.03
ATR_00062G00010	Amborella trichopoda	1e-31	121	84	71.43
ATR_00062G00030	Amborella trichopoda	8e-31	117	98	66.33
PP00353G00180	Physcomitrella patens	3e-21	94.4	158	37.34
ATR_00069G00950	Amborella trichopoda	2e-19	89.0	193	31.09
ATR_00055G01550	Amborella trichopoda	7e-19	84.7	114	39.47
PP00037G01500	Physcomitrella patens	9e-19	90.5	179	29.61
ATR_01729G00020	Amborella trichopoda	2e-18	82.0	63	58.73
PP00024G01140	Physcomitrella patens	4e-17	85.1	178	27.53
PP00002G02710	Physcomitrella patens	4e-16	75.9	76	48.68
ATR_00004G02620	Amborella trichopoda	2e-14	71.2	70	48.57
ATR_00065G01730	Amborella trichopoda	2e-14	70.9	43	69.77
OS03G02610	Oryza sativa	1e-13	73.2	179	30.73
YLR213C	Saccharomyces cerevisiae strain S288C	2e-13	73.6	207	30.92
YGR189C	Saccharomyces cerevisiae strain S288C	2e-09	62.0	153	31.37
OS04G53950	Oryza sativa	9e-09	59.3	66	45.45
ATR_00065G01780	Amborella trichopoda	2e-08	55.1	91	36.26
ATR_00065G01720	Amborella trichopoda	3e-06	48.9	25	80.00

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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