Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT4G02500	Arabidopsis thaliana	0.0	962	462	100.00
AT3G62720	Arabidopsis thaliana	0.0	813	465	83.01
ATR_00002G04280	Amborella trichopoda	0.0	757	457	78.34
OS03G18820	Oryza sativa	0.0	648	465	72.26
ATR_00086G00680	Amborella trichopoda	0.0	569	446	59.64
AT1G74380	Arabidopsis thaliana	0.0	546	434	58.53
AT5G07720	Arabidopsis thaliana	0.0	541	437	58.12
OS02G32750	Oryza sativa	0.0	536	438	57.53
PP00210G00140	Physcomitrella patens	0.0	521	436	59.40
PP00216G00110	Physcomitrella patens	0.0	520	445	56.40
PP00151G00200	Physcomitrella patens	2e-178	514	444	55.86
PP00017G01780	Physcomitrella patens	6e-178	513	443	55.76
AT1G18690	Arabidopsis thaliana	3e-176	511	480	52.08
OS12G05380	Oryza sativa	9e-172	498	438	54.34
PP00185G00400	Physcomitrella patens	2e-156	459	443	50.11
OS03G19310	Oryza sativa	8e-155	456	351	58.97
OS03G19330	Oryza sativa	5e-154	452	345	59.71
PP00143G00070	Physcomitrella patens	4e-153	451	337	62.31
PP00020G01560	Physcomitrella patens	5e-151	445	436	50.46
PP00118G00440	Physcomitrella patens	2e-150	442	437	51.49
PP00100G00720	Physcomitrella patens	1e-149	442	439	46.92
PP00096G00580	Physcomitrella patens	9e-149	437	443	53.27
PP00017G00080	Physcomitrella patens	1e-147	437	441	48.75
PP00035G00960	Physcomitrella patens	3e-147	434	447	51.68
PP00167G00370	Physcomitrella patens	8e-147	434	439	49.20
PP00020G01850	Physcomitrella patens	1e-145	432	441	48.07
PP00071G00800	Physcomitrella patens	2e-143	426	434	48.39
PP00074G01210	Physcomitrella patens	8e-129	388	329	53.80
PP00085G00460	Physcomitrella patens	8e-126	379	444	45.05
PP00298G00260	Physcomitrella patens	4e-125	378	345	51.59
PP00052G00390	Physcomitrella patens	5e-122	369	303	54.79
PP00091G00730	Physcomitrella patens	7e-121	367	343	51.31
ATR_00065G00970	Amborella trichopoda	4e-104	325	348	44.83
OS02G49140	Oryza sativa	4e-94	298	354	41.81
AT2G22900	Arabidopsis thaliana	2e-92	294	349	41.83
AT4G37690	Arabidopsis thaliana	1e-91	291	349	40.69
OS11G34390	Oryza sativa	2e-91	293	350	40.86
ATR_00045G03370	Amborella trichopoda	3e-56	199	280	37.50
PP00055G00530	Physcomitrella patens	2e-45	167	257	36.58
AT4G38310	Arabidopsis thaliana	5e-27	109	115	44.35
CV00G18060	Coccomyxa subellipsoidea C-169	8e-26	111	309	27.18
CV00G63830	Coccomyxa subellipsoidea C-169	7e-23	106	275	27.64
emh396230	Emiliania huxleyi	5e-21	100	241	31.12
AC00G26900	Asterochloris sp. Cgr-DA1pho v2.0	3e-16	85.5	299	25.08
emh721440	Emiliania huxleyi	2e-15	82.4	138	33.33
MP08G01360	Micromonas pusilla strain CCMP1545	9e-11	67.4	182	30.77
ATR_00064G00080	Amborella trichopoda	1e-09	60.8	100	33.00
MRCC299_11G04750	Micromonas sp RCC299	2e-08	60.1	183	28.42
OM_14G01130	Ostreococcus mediterraneus	4e-08	58.9	177	27.12
BPRRCC1105_02G00900	Bathycoccus prasinos	4e-07	56.2	185	24.32
SPBC1289.13c	Schizosaccharomyces pombe	9e-07	54.7	269	20.82
PTI_04G01230	Phaeodactylum tricornutum	1e-06	55.1	141	27.66
VC00G129850	Volvox carteri	7e-06	50.4	120	30.83

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment